Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   EPB55_RS14720 Genome accession   NZ_CP035731
Coordinates   3000935..3001579 (+) Length   214 a.a.
NCBI ID   WP_011080857.1    Uniprot ID   A0A3Q0L732
Organism   Vibrio vulnificus strain 2142-77     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2995935..3006579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS14710 - 2996116..2998212 (+) 2097 WP_039553238.1 EAL domain-containing protein -
  EPB55_RS14715 - 2998209..3000578 (-) 2370 WP_085760866.1 DNA polymerase II -
  EPB55_RS14720 letA 3000935..3001579 (+) 645 WP_011080857.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  EPB55_RS14725 uvrC 3001581..3003413 (+) 1833 WP_103277364.1 excinuclease ABC subunit UvrC -
  EPB55_RS14730 pgsA 3003460..3004017 (+) 558 WP_011080855.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23791.42 Da        Isoelectric Point: 6.4960

>NTDB_id=304444 EPB55_RS14720 WP_011080857.1 3000935..3001579(+) (letA) [Vibrio vulnificus strain 2142-77]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGENAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMMMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLSINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=304444 EPB55_RS14720 WP_011080857.1 3000935..3001579(+) (letA) [Vibrio vulnificus strain 2142-77]
TTGATCAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGATAGCGGTGAAAATGCGGTAAAATGGTGTCGTAGCAATCATGCAGACGTCGTTTTAATGG
ATATGAACATGCCTGGTATTGGCGGCTTGGAAGCTACCAAGAAAATTTTGCGTGTTAATCCAGATGTAAAAATCATCGTC
TTAACTGTTCATACGGAAAATCCGTTTCCAACTAAAGTGATGCAAGCGGGGGCTTCTGGTTATTTGACCAAAGGCGCTGG
CCCAGATGAAATGGTGAATGCAATTCGTATTGTCCACAGTGGGCAACGTTATATTTCACCAGAAATTGCGCAGCAAATGG
CGTTAAGCCAGTTTTCGCCTGCGTCCGAAAACCCTTTCAAGGATCTGTCTGAGCGTGAGCTTCAGATCATGATGATGATC
ACGAAAGGTCAGAAAGTGACAGATATTTCTGAGCAGTTAAATCTCAGTCCTAAAACCGTCAACAGTTATCGTTATCGTTT
GTTTAGCAAACTATCGATTAATGGTGACGTAGAGTTGACCCATTTGGCGATTCGTCACGGAATGTTAGATACCGAGACTC
TCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.476

98.131

0.495
  letA Legionella pneumophila strain ERS1305867

50.476

98.131

0.495

Multiple sequence alignment