Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EPB55_RS10505 Genome accession   NZ_CP035731
Coordinates   2097753..2098427 (+) Length   224 a.a.
NCBI ID   WP_011078895.1    Uniprot ID   Q7MPS7
Organism   Vibrio vulnificus strain 2142-77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2092753..2103427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS10485 - 2092800..2093738 (-) 939 WP_103277527.1 Kdo(2)-lipid IV(A) acyltransferase -
  EPB55_RS10490 slmA 2093742..2094332 (-) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  EPB55_RS10495 coaBC 2094483..2095688 (-) 1206 WP_045618527.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EPB55_RS10500 - 2095972..2097639 (+) 1668 WP_013572551.1 methyl-accepting chemotaxis protein -
  EPB55_RS10505 radC 2097753..2098427 (+) 675 WP_011078895.1 DNA repair protein RadC Machinery gene
  EPB55_RS10510 rpmB 2098739..2098975 (+) 237 WP_011078894.1 50S ribosomal protein L28 -
  EPB55_RS10515 rpmG 2098991..2099161 (+) 171 WP_011078893.1 50S ribosomal protein L33 -
  EPB55_RS10520 - 2099450..2099947 (+) 498 WP_103276873.1 hypothetical protein -
  EPB55_RS10525 mutM 2099977..2100786 (+) 810 WP_103276874.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EPB55_RS10530 - 2100933..2102909 (+) 1977 WP_103276875.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25340.02 Da        Isoelectric Point: 7.5165

>NTDB_id=304425 EPB55_RS10505 WP_011078895.1 2097753..2098427(+) (radC) [Vibrio vulnificus strain 2142-77]
MSLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=304425 EPB55_RS10505 WP_011078895.1 2097753..2098427(+) (radC) [Vibrio vulnificus strain 2142-77]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGAGAAAAATTGCTTCAGCGAGGGCCTCAATCTTTGTCTGATGC
CGAGTTGCTTGCGATCTTTTTACGAACAGGCACACAAGGAATGAACGTAATTGAACTCGCTGATTTTCTGTTGCGAGACT
TTGGTTCGCTGAGAAAACTCTTTTCTGCCGATGAACAGAGCTTTTGTCGTCACAAAGGATTGGGGCAGGCAAAGTACGTT
CAATTACAAGCTGTTTTGGAAATGACGCAACGTTATTTGGCCGAAACACTGCAACGTGGTGATGCGCTCACCAGTCCTCA
GCATACCAAGCTTTATCTCTCTTCCATGCTGCGCGATCGCCATCGAGAAGCGTTTTATGTGTTGTTCCTCGACAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCTTCGGTCTATCCTCGGGAAGTCGTTAAAAGA
GCCTTACACTATAATGCGGCAGCTTTAATATTAGCGCACAACCATCCCTCTGGAGTGGCAGAGCCAAGCCAAGCAGACCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTTGTCGGCGATGGGG
AAGTGGTTTCCTTTGCGGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(4-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MPS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.241

96.429

0.513
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.375

Multiple sequence alignment