Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DV365_RS08670 Genome accession   NZ_CP031237
Coordinates   1761620..1762273 (+) Length   217 a.a.
NCBI ID   WP_005694574.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M12125     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756620..1767273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV365_RS08645 - 1757037..1758041 (-) 1005 WP_005651072.1 ornithine carbamoyltransferase -
  DV365_RS08650 - 1758445..1759263 (+) 819 WP_114890695.1 Cof-type HAD-IIB family hydrolase -
  DV365_RS08655 crcB 1759263..1759649 (+) 387 WP_005658943.1 fluoride efflux transporter CrcB -
  DV365_RS08660 recX 1759646..1760104 (-) 459 WP_038439484.1 recombination regulator RecX -
  DV365_RS08665 recA 1760183..1761247 (-) 1065 WP_050847756.1 recombinase RecA Machinery gene
  DV365_RS08670 sxy/tfoX 1761620..1762273 (+) 654 WP_005694574.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25001.38 Da        Isoelectric Point: 10.0171

>NTDB_id=304379 DV365_RS08670 WP_005694574.1 1761620..1762273(+) (sxy/tfoX) [Haemophilus influenzae strain M12125]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=304379 DV365_RS08670 WP_005694574.1 1761620..1762273(+) (sxy/tfoX) [Haemophilus influenzae strain M12125]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.539

100

0.995

Multiple sequence alignment