Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   DV400_RS01030 Genome accession   NZ_CP031236
Coordinates   200680..201189 (-) Length   169 a.a.
NCBI ID   WP_050948870.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25267     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195680..206189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV400_RS01000 nfuA 196229..196825 (-) 597 WP_021034385.1 Fe-S biogenesis protein NfuA -
  DV400_RS01005 - 196901..197587 (-) 687 WP_050948865.1 ComF family protein -
  DV400_RS01010 tnpA 197946..198401 (-) 456 WP_050948866.1 IS200/IS605 family transposase -
  DV400_RS01015 comE 198398..199741 (-) 1344 WP_050948867.1 type IV pilus secretin PilQ Machinery gene
  DV400_RS01020 - 199751..200165 (-) 415 Protein_198 pilus assembly protein PilP -
  DV400_RS01025 comC 200162..200683 (-) 522 WP_050948869.1 competence protein ComC Machinery gene
  DV400_RS01030 comB 200680..201189 (-) 510 WP_050948870.1 hypothetical protein Machinery gene
  DV400_RS01035 comA 201190..201987 (-) 798 WP_050948871.1 pilus assembly protein PilM Machinery gene
  DV400_RS01040 - 202086..204686 (+) 2601 WP_050948872.1 penicillin-binding protein 1A -
  DV400_RS01045 - 204763..205608 (+) 846 WP_005652116.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV400_RS01050 - 205761..206090 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19976.93 Da        Isoelectric Point: 9.3342

>NTDB_id=304318 DV400_RS01030 WP_050948870.1 200680..201189(-) (comB) [Haemophilus influenzae strain M25267]
MSMNLLPWRTYQHQNRLRRLAFYIALFILLAINLTLAFSNLIEQQKQDLQAQQTSFEQLNQQLYKTAKKIEQLRSAVQVG
EILTSIPKEQVKKSLQRLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFQPEQQSLYFLF
DVEQVGEDK

Nucleotide


Download         Length: 510 bp        

>NTDB_id=304318 DV400_RS01030 WP_050948870.1 200680..201189(-) (comB) [Haemophilus influenzae strain M25267]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAACCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAACTTTGGCTTTTAGTAATTTAATTGAACAACAAAAACAAGATCTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTTATAAAACCGCCAAGAAAATTGAACAGTTGCGTAGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCGGCTAAGTGAATTACCTTTTCAGCAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAACCTGAACAACAGTCATTGTATTTTCTCTTT
GATGTGGAACAAGTTGGAGAAGATAAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

86.826

98.817

0.858
  comB Haemophilus influenzae Rd KW20

85.629

98.817

0.846

Multiple sequence alignment