Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PLA107_RS28280 | Genome accession | NZ_CP031225 |
| Coordinates | 4884594..4885466 (+) | Length | 290 a.a. |
| NCBI ID | WP_005745479.1 | Uniprot ID | A0AB37R9U1 |
| Organism | Pseudomonas amygdali pv. lachrymans str. M301315 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4879594..4890466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PLA107_RS28260 (PLA107_023755) | - | 4879743..4880720 (-) | 978 | WP_007247761.1 | IS5 family transposase | - |
| PLA107_RS28265 (PLA107_023760) | - | 4881066..4881452 (-) | 387 | WP_005745483.1 | pilin | - |
| PLA107_RS28270 (PLA107_023765) | pilB | 4881678..4883372 (+) | 1695 | WP_005745482.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PLA107_RS28275 (PLA107_023770) | pilC | 4883375..4884592 (+) | 1218 | WP_005745480.1 | type II secretion system F family protein | Machinery gene |
| PLA107_RS28280 (PLA107_023775) | pilD | 4884594..4885466 (+) | 873 | WP_005745479.1 | A24 family peptidase | Machinery gene |
| PLA107_RS28285 (PLA107_023780) | coaE | 4885463..4886086 (+) | 624 | WP_005745478.1 | dephospho-CoA kinase | - |
| PLA107_RS28290 (PLA107_023785) | yacG | 4886083..4886292 (+) | 210 | WP_005745477.1 | DNA gyrase inhibitor YacG | - |
| PLA107_RS28300 (PLA107_023795) | - | 4886493..4886774 (-) | 282 | Protein_4444 | hypothetical protein | - |
| PLA107_RS28305 (PLA107_023800) | - | 4886892..4887521 (+) | 630 | WP_003430735.1 | DUF1780 domain-containing protein | - |
| PLA107_RS28310 (PLA107_023805) | - | 4887518..4888051 (+) | 534 | WP_005745473.1 | MOSC domain-containing protein | - |
| PLA107_RS28315 (PLA107_023810) | - | 4888065..4888172 (+) | 108 | WP_080164415.1 | DUF3094 family protein | - |
| PLA107_RS28320 (PLA107_023815) | - | 4888269..4889567 (+) | 1299 | WP_005745472.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32049.32 Da Isoelectric Point: 8.5809
>NTDB_id=304236 PLA107_RS28280 WP_005745479.1 4884594..4885466(+) (pilD) [Pseudomonas amygdali pv. lachrymans str. M301315]
MPLLDLLASSPLAFVITCCILGMIIGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPDQPAFNLNRPRSSCPHCAHKIR
PRENLPLISYLLLRGKCSQCKAPISMRYPMVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR
MPLLDLLASSPLAFVITCCILGMIIGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPDQPAFNLNRPRSSCPHCAHKIR
PRENLPLISYLLLRGKCSQCKAPISMRYPMVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR
Nucleotide
Download Length: 873 bp
>NTDB_id=304236 PLA107_RS28280 WP_005745479.1 4884594..4885466(+) (pilD) [Pseudomonas amygdali pv. lachrymans str. M301315]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCACCGCTGGCCTTCGTCATTACCTGCTGCATCCTCGGCATGATCATCGGAAG
CTTCCTCAACGTAGTCGTCTACCGCCTCCCCAAAATGATGGAGCGCGACTGGAAAGCCCAATCCCGTGAAATGCTCGGCC
TGCCCGCCGAACCTGATCAGCCTGCCTTCAACCTGAACCGCCCCCGCTCCAGTTGCCCGCACTGCGCGCACAAGATCCGC
CCGAGGGAAAACCTGCCGCTGATCAGCTATCTGCTGCTGCGCGGTAAATGCTCACAATGCAAAGCCCCCATCAGCATGCG
CTACCCAATGGTCGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTCGCCTGGCATTTCGGCTTCGGCTGGCAGGCAGCGG
CGATGCTGGTGTTGAGCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGACCACCAGCTGTTACCTGACTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTCATCGTCAACGCTTTCGGGCTGTTCACCTCGCTGAACGATGCGCTGTGGGGCGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGCTATTTAAACTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTTGGCGCATGGGGCGGCTGGCAGATTCTGCCGTTGACCATCCTGCTGTCATCGCTGGTGGGT
GCGGTGCTTGGGGTGATCATGATGCGCGTGCGCAGGGTTGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA
ATGCCCCTCCTCGACCTCCTGGCCAGCTCACCGCTGGCCTTCGTCATTACCTGCTGCATCCTCGGCATGATCATCGGAAG
CTTCCTCAACGTAGTCGTCTACCGCCTCCCCAAAATGATGGAGCGCGACTGGAAAGCCCAATCCCGTGAAATGCTCGGCC
TGCCCGCCGAACCTGATCAGCCTGCCTTCAACCTGAACCGCCCCCGCTCCAGTTGCCCGCACTGCGCGCACAAGATCCGC
CCGAGGGAAAACCTGCCGCTGATCAGCTATCTGCTGCTGCGCGGTAAATGCTCACAATGCAAAGCCCCCATCAGCATGCG
CTACCCAATGGTCGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTCGCCTGGCATTTCGGCTTCGGCTGGCAGGCAGCGG
CGATGCTGGTGTTGAGCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGACCACCAGCTGTTACCTGACTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTCATCGTCAACGCTTTCGGGCTGTTCACCTCGCTGAACGATGCGCTGTGGGGCGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGCTATTTAAACTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTTGGCGCATGGGGCGGCTGGCAGATTCTGCCGTTGACCATCCTGCTGTCATCGCTGGTGGGT
GCGGTGCTTGGGGTGATCATGATGCGCGTGCGCAGGGTTGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.169 |
97.931 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
51.943 |
97.586 |
0.507 |
| pilD | Acinetobacter baumannii D1279779 |
52.92 |
94.483 |
0.5 |
| pilD | Acinetobacter nosocomialis M2 |
52.555 |
94.483 |
0.497 |
| pilD | Neisseria gonorrhoeae MS11 |
50.373 |
92.414 |
0.466 |