Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EPB54_RS03015 Genome accession   NZ_CP035701
Coordinates   588936..589664 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 583936..594664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS02990 trpR 584324..584635 (+) 312 WP_005497218.1 trp operon repressor -
  EPB54_RS02995 yjjX 584684..585217 (-) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  EPB54_RS03000 pheA 585242..586420 (-) 1179 WP_005468591.1 prephenate dehydratase -
  EPB54_RS03005 raiA 586663..586989 (-) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  EPB54_RS03010 - 587320..588801 (-) 1482 WP_062905970.1 lytic transglycosylase F -
  EPB54_RS03015 comL 588936..589664 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  EPB54_RS03020 rluD 589801..590778 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EPB54_RS03025 pgeF 590780..591508 (+) 729 WP_025639993.1 peptidoglycan editing factor PgeF -
  EPB54_RS03030 clpC 591656..594229 (+) 2574 WP_031778672.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=304213 EPB54_RS03015 WP_005460312.1 588936..589664(-) (comL) [Vibrio parahaemolyticus strain 2012AW-0154]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=304213 EPB54_RS03015 WP_005460312.1 588936..589664(-) (comL) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGTAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405