Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AMYT_RS04995 Genome accession   NZ_CP031219
Coordinates   972339..974171 (-) Length   610 a.a.
NCBI ID   WP_114841454.1    Uniprot ID   A0AAX2AHY8
Organism   Malaciobacter mytili LMG 24559     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 967339..979171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMYT_RS04970 (AMYT_0996) - 967469..969220 (+) 1752 WP_114841449.1 YgiQ family radical SAM protein -
  AMYT_RS04975 (AMYT_0997) - 969305..969874 (+) 570 WP_114841450.1 adenylate kinase -
  AMYT_RS04980 (AMYT_0998) - 969889..970653 (+) 765 WP_114841451.1 molybdopterin-binding protein -
  AMYT_RS04985 (AMYT_0999) - 970650..971315 (-) 666 WP_114841452.1 tetratricopeptide repeat protein -
  AMYT_RS04990 (AMYT_1000) - 971312..972334 (-) 1023 WP_114841453.1 alanine racemase -
  AMYT_RS04995 (AMYT_1001) uvrC 972339..974171 (-) 1833 WP_114841454.1 excinuclease ABC subunit UvrC Machinery gene
  AMYT_RS05000 (AMYT_1002) - 974304..975212 (-) 909 WP_114841455.1 hypothetical protein -
  AMYT_RS05005 (AMYT_1003) - 975323..976003 (+) 681 WP_114841456.1 SOS response-associated peptidase -
  AMYT_RS05010 (AMYT_1004) - 975978..976742 (-) 765 WP_114841457.1 phosphotransferase -
  AMYT_RS05015 (AMYT_1005) pnuC 976729..977385 (-) 657 WP_322934328.1 nicotinamide riboside transporter PnuC -
  AMYT_RS05020 (AMYT_1006) - 977446..977724 (+) 279 WP_114841459.1 putative quinol monooxygenase -
  AMYT_RS05025 (AMYT_1007) - 977735..978355 (+) 621 WP_114841460.1 hypothetical protein -
  AMYT_RS05030 (AMYT_1008) - 978357..978851 (-) 495 WP_114841461.1 SprT-like domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 71493.05 Da        Isoelectric Point: 9.2074

>NTDB_id=304141 AMYT_RS04995 WP_114841454.1 972339..974171(-) (uvrC) [Malaciobacter mytili LMG 24559]
MNLEEKLKELPNNAGVYQYFDKEGHLLYIGKAKVLKNRVKSYFKFTPTLAPADKLSPRIFKMISEVKSLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIVIDYKEDFPRLEITRKVLKDKNIKYFGPYSTGARDMLDSIYEIIPLVQKKSC
IKGKEACLFHQINKCHAPCIGKISKEDYAKLIQEALEYIYNKSKIVKKLNEKMLQYSEEFRFEEAMKLRDRIKTIEKSQI
QTGMDLATKEDLDLFAIKVSKEKAVVVRMFFRDGKLASSNHDYLKINQGELEIDINEAYKRAIINYYDNEIPLLPKEIIV
ANEITEDLEEIEEFLKERFEKNIPIIYPKRGKKTQIIQIALNNCEELLRLQKVNTTTIYEELKELFSLNTTPNRFECFDN
SHMMGQATVGAMVTWEEKFVKKDYRHYNLEAKDEYAQMKETLIRRSESFEKNPAPDLWVIDGGETLLKLAIDIRNSIGVN
LNIIAIAKEKLDFKAHRAKGSAKDIVFYELNNEIKRVDLLPSDKRLQFIQRLRDEAHRFAISFHKKQKRKEDSKISLLQI
KGIGEAKIKKLLLYFGEFEKIKNATFEELKNVLNEKDARILLNYFNNLEG

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=304141 AMYT_RS04995 WP_114841454.1 972339..974171(-) (uvrC) [Malaciobacter mytili LMG 24559]
ATGAATCTAGAAGAAAAACTAAAAGAATTACCAAATAATGCTGGGGTATATCAATACTTTGATAAAGAGGGACATTTATT
ATATATAGGAAAAGCTAAAGTGCTTAAAAATAGAGTAAAATCCTATTTTAAATTTACTCCTACTTTAGCACCAGCTGATA
AATTAAGCCCTAGAATTTTTAAAATGATTAGTGAAGTAAAATCCTTAGAATGGATTGTAGTACCAAATGAACATGATGCA
CTTATACTTGAAAATTCACTTATTAAACAATTAAAACCAAAATATAATATCTTATTAAGAGATGATAAGACTTATCCTTA
TATAGTAATTGATTATAAAGAAGATTTTCCAAGACTAGAAATTACTAGAAAAGTTTTAAAAGATAAAAATATTAAATACT
TTGGTCCTTACTCAACAGGGGCTAGAGATATGCTTGATAGTATATATGAAATCATACCTTTAGTTCAAAAAAAATCTTGT
ATAAAAGGAAAAGAAGCCTGTTTATTTCATCAAATAAATAAATGTCATGCTCCTTGTATTGGTAAAATTTCAAAAGAAGA
TTATGCAAAACTAATACAAGAAGCTTTAGAATATATTTATAATAAATCAAAAATTGTAAAAAAATTAAATGAAAAAATGT
TGCAATATTCAGAAGAGTTTAGATTTGAAGAAGCTATGAAATTAAGAGATAGAATTAAAACAATAGAAAAATCTCAAATT
CAAACAGGTATGGATTTAGCAACAAAAGAAGATTTAGACCTTTTTGCTATTAAAGTTTCAAAAGAAAAAGCAGTAGTTGT
TAGAATGTTCTTTAGAGATGGGAAATTAGCTTCAAGTAATCATGATTATTTAAAAATAAATCAAGGTGAACTTGAAATAG
ATATAAATGAAGCCTATAAACGAGCAATTATTAACTATTATGATAATGAAATTCCCCTACTTCCAAAAGAGATTATTGTT
GCAAATGAAATAACTGAAGATTTAGAAGAAATAGAAGAGTTTTTAAAAGAGAGATTTGAAAAAAACATTCCTATTATTTA
CCCTAAAAGAGGTAAAAAAACACAAATTATTCAAATTGCTTTAAATAACTGTGAAGAGCTATTAAGGCTTCAAAAAGTAA
ATACAACTACAATATATGAAGAGTTAAAAGAGTTATTTTCTTTAAATACTACTCCAAATAGATTTGAATGTTTTGATAAC
TCTCATATGATGGGACAAGCAACTGTTGGAGCAATGGTCACATGGGAAGAAAAATTTGTAAAAAAAGATTATAGACACTA
TAATCTAGAAGCAAAAGATGAGTACGCTCAAATGAAAGAGACATTAATTAGAAGAAGTGAAAGCTTTGAAAAAAATCCTG
CACCTGATTTATGGGTAATAGATGGAGGAGAGACTTTATTAAAACTTGCAATTGATATTAGAAACTCTATTGGAGTAAAT
TTAAATATTATAGCAATAGCTAAAGAGAAATTGGATTTTAAAGCTCATAGAGCAAAAGGTAGTGCAAAAGATATAGTGTT
TTATGAACTTAATAATGAAATAAAAAGAGTAGATTTACTTCCAAGTGATAAAAGATTACAATTTATTCAAAGATTAAGAG
ATGAAGCACATAGGTTTGCAATTAGTTTTCATAAGAAACAAAAAAGAAAAGAAGATAGTAAAATTTCACTATTACAAATT
AAAGGTATAGGTGAAGCTAAGATTAAAAAGCTTTTATTATATTTTGGTGAATTTGAAAAAATTAAAAATGCAACTTTTGA
AGAACTAAAAAATGTTCTAAATGAGAAAGATGCAAGAATACTATTAAATTATTTTAACAATTTAGAGGGTTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(14-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-541)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.669

98.033

0.497

Multiple sequence alignment