Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ABIV_RS03525 Genome accession   NZ_CP031217
Coordinates   700191..702044 (-) Length   617 a.a.
NCBI ID   WP_114838585.1    Uniprot ID   A0AAX2A9D0
Organism   Halarcobacter bivalviorum strain LMG 26154     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 695191..707044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABIV_RS03505 (ABIV_0701) - 696142..697113 (+) 972 WP_162917971.1 zinc transporter ZntB -
  ABIV_RS03510 (ABIV_0702) mgtE 697116..698483 (+) 1368 WP_114840437.1 magnesium transporter -
  ABIV_RS03515 (ABIV_0703) - 698488..699153 (-) 666 WP_114838583.1 tetratricopeptide repeat protein -
  ABIV_RS03520 (ABIV_0704) - 699165..700187 (-) 1023 WP_114838584.1 alanine racemase -
  ABIV_RS03525 (ABIV_0705) uvrC 700191..702044 (-) 1854 WP_114838585.1 excinuclease ABC subunit UvrC Machinery gene
  ABIV_RS03530 (ABIV_0706) - 702155..704059 (+) 1905 WP_114838586.1 cache domain-containing protein -
  ABIV_RS03535 (ABIV_0707) - 704070..706169 (-) 2100 WP_228254330.1 methyl-accepting chemotaxis protein -
  ABIV_RS03540 (ABIV_0708) - 706352..707011 (-) 660 WP_114838587.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 72074.24 Da        Isoelectric Point: 8.6702

>NTDB_id=304126 ABIV_RS03525 WP_114838585.1 700191..702044(-) (uvrC) [Halarcobacter bivalviorum strain LMG 26154]
MNLEEKLKQLPNEAGVYQYFDKDGHLLYIGKAKVLKNRVKSYFKFTPSLQPAEKLGPRIYKMITEVVSLEWIVVPNEHEA
LILENSLIKQLKPKYNILLRDDKTYPYIMLDNSELFPRLEITRRVHKNNNIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
IKGKEACLFYQIKKCHAPCEGKISTAEYAKLVDEACEYIYNKNKLISKLSEKMMQYSDEFRFEDAMKLRDRIKSIEKSQI
KSGIDLASNEDLDLFAIKAGTKKGVVVRMFIRDGKITSSSYDFIKLDFLEDNKDIDLNEAYQRAIVNYYDNEIPLLPKEI
LIAQEIEEKEEIEEFLKTRFNRNIKIINPKKDKKKALINIALNNCDELLRIESSKNQTTIYDELKELFNLQTLPYLIESF
DNSHMMGQATVGAMVVWNEELNAFDKKQFRHYNLEAKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVQ
SVGVNLDIIAIAKEKVDAKAHRAKGAAKDIVHYKDRSGEIRSLKLRTSDQRLQFIQRQRDEAHRFVINFHKKQKRKEDKQ
VSLLQIKGIGEAKVKKLLLYFGTFEKIKEASIEELKEVLNEKDAILLNNYFQNNQED

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=304126 ABIV_RS03525 WP_114838585.1 700191..702044(-) (uvrC) [Halarcobacter bivalviorum strain LMG 26154]
ATGAATTTAGAAGAGAAATTAAAGCAACTGCCAAACGAAGCAGGAGTTTATCAATATTTTGATAAAGATGGTCATTTACT
CTATATAGGTAAAGCAAAAGTACTTAAAAACAGAGTTAAATCATATTTTAAATTTACTCCTTCTTTACAACCAGCAGAAA
AGCTAGGTCCTAGAATTTATAAAATGATTACAGAGGTAGTCTCTTTAGAGTGGATTGTTGTACCAAATGAACATGAAGCT
TTGATTTTAGAGAACTCTTTAATTAAACAATTAAAACCTAAATACAATATCTTACTTAGAGATGATAAAACCTACCCTTA
TATAATGCTTGATAATAGTGAACTTTTTCCTAGACTTGAAATAACAAGAAGAGTTCATAAAAACAATAATATTAAATATT
TTGGTCCTTATTCAACAGGAGCAAGAGATATGCTTGATTCAATTTATGAGATAGTTCCTTTAGTACAGAAAAAATCATGT
ATTAAAGGAAAAGAAGCTTGTCTTTTCTATCAAATAAAAAAATGTCATGCACCTTGTGAAGGTAAGATTTCTACGGCAGA
ATATGCAAAGTTAGTTGATGAAGCTTGTGAATATATCTATAATAAAAATAAACTAATAAGTAAGCTAAGTGAAAAGATGA
TGCAATATTCAGATGAATTTAGATTTGAAGATGCTATGAAATTAAGAGATAGAATAAAATCAATTGAAAAATCTCAAATC
AAATCAGGAATAGATTTAGCTTCAAACGAAGACTTAGACCTTTTTGCAATAAAAGCTGGTACAAAAAAAGGTGTAGTTGT
AAGAATGTTTATAAGAGATGGGAAAATAACCTCTTCTTCTTATGATTTTATAAAATTAGACTTTTTAGAAGATAATAAAG
ATATTGACTTAAATGAAGCATATCAAAGAGCAATAGTAAATTATTATGATAATGAAATCCCCCTACTTCCAAAAGAGATT
TTAATTGCACAAGAAATTGAAGAAAAAGAAGAGATTGAAGAGTTCTTAAAAACAAGATTTAATAGAAATATTAAAATCAT
AAACCCTAAAAAAGATAAGAAAAAAGCTTTAATAAATATTGCTTTAAATAACTGTGATGAACTTCTTAGAATTGAATCTT
CAAAAAATCAAACAACTATTTATGATGAGTTAAAAGAGTTATTTAATCTACAAACTCTACCATATTTAATAGAGAGTTTT
GATAACTCCCATATGATGGGTCAAGCAACTGTTGGAGCTATGGTTGTTTGGAATGAAGAGCTAAATGCCTTTGATAAAAA
ACAGTTTAGACACTATAACTTAGAAGCAAAAGATGAATACTCACAAATGAGAGAGATGCTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATTGATGGTGGAGAGACTCTATTAAAACTTGCCTATGATATTGTTCAA
TCTGTGGGAGTAAACTTAGATATTATAGCTATTGCAAAAGAGAAAGTAGATGCAAAAGCTCATAGAGCAAAAGGTGCAGC
TAAAGATATTGTTCACTATAAAGATAGAAGTGGTGAAATTAGAAGTTTAAAACTACGAACAAGTGATCAAAGACTACAAT
TTATACAAAGACAAAGAGATGAAGCACATAGATTTGTTATAAACTTTCATAAAAAACAAAAAAGAAAAGAAGATAAACAA
GTTTCACTTTTACAAATAAAAGGTATTGGTGAAGCAAAGGTTAAAAAGCTACTACTTTACTTTGGAACTTTTGAGAAAAT
AAAAGAGGCTTCAATAGAAGAATTAAAAGAAGTTCTAAATGAAAAAGATGCTATTTTACTAAATAATTATTTCCAGAATA
ATCAAGAGGATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

GIY-YIG catalytic domain (GIY-YIG)

(14-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

49.42

97.731

0.483

Multiple sequence alignment