Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UCCLBBS449_RS00040 Genome accession   NZ_CP031198
Coordinates   10216..10782 (+) Length   188 a.a.
NCBI ID   WP_042520603.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain UCCLBBS449     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5216..15782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UCCLBBS449_RS00030 (UCCLBBS449_0006) gyrA 6689..9223 (+) 2535 WP_011666821.1 DNA gyrase subunit A -
  UCCLBBS449_RS00035 (UCCLBBS449_0007) rpsF 9886..10182 (+) 297 WP_011666822.1 30S ribosomal protein S6 -
  UCCLBBS449_RS00040 (UCCLBBS449_0008) ssb 10216..10782 (+) 567 WP_042520603.1 single-stranded DNA-binding protein Machinery gene
  UCCLBBS449_RS00045 (UCCLBBS449_0009) rpsR 10811..11047 (+) 237 WP_011666824.1 30S ribosomal protein S18 -
  UCCLBBS449_RS00050 (UCCLBBS449_0010) - 11192..12379 (-) 1188 WP_042520602.1 amidohydrolase family protein -
  UCCLBBS449_RS00055 (UCCLBBS449_0011) - 12410..14017 (-) 1608 WP_139592504.1 peptide ABC transporter substrate-binding protein -
  UCCLBBS449_RS00060 (UCCLBBS449_0012) - 14626..15411 (+) 786 WP_042520601.1 hypothetical protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20544.14 Da        Isoelectric Point: 4.7381

>NTDB_id=304028 UCCLBBS449_RS00040 WP_042520603.1 10216..10782(+) (ssb) [Levilactobacillus brevis strain UCCLBBS449]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAQAAPSQGMAPNSGSNNQ
NSNANNNAADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=304028 UCCLBBS449_RS00040 WP_042520603.1 10216..10782(+) (ssb) [Levilactobacillus brevis strain UCCLBBS449]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTACGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAATCCATACACGAGTGGGAATCCAGCTCAGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAGTAACAATCAG
AACAGTAATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGCGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.702

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.574

Multiple sequence alignment