Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DV527_RS04690 Genome accession   NZ_CP031196
Coordinates   976569..977198 (+) Length   209 a.a.
NCBI ID   WP_002482846.1    Uniprot ID   A0A380HJV9
Organism   Staphylococcus saprophyticus strain 1A     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 971569..982198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV527_RS04665 (DV527_04675) - 972418..973404 (-) 987 WP_002482841.1 aromatic acid exporter family protein -
  DV527_RS04670 (DV527_04680) map 973579..974331 (+) 753 WP_011302778.1 type I methionyl aminopeptidase -
  DV527_RS04675 (DV527_04685) - 974435..974821 (+) 387 WP_041079966.1 hypothetical protein -
  DV527_RS04680 (DV527_04690) liaF 974838..975539 (+) 702 WP_011302780.1 cell wall-active antibiotics response protein LiaF -
  DV527_RS04685 (DV527_04695) vraS 975536..976579 (+) 1044 WP_011302781.1 sensor histidine kinase Regulator
  DV527_RS04690 (DV527_04700) vraR 976569..977198 (+) 630 WP_002482846.1 response regulator transcription factor Regulator
  DV527_RS04695 (DV527_04705) - 977355..978527 (-) 1173 WP_002482847.1 YihY/virulence factor BrkB family protein -
  DV527_RS04700 (DV527_04710) - 978939..979223 (-) 285 WP_002482848.1 hypothetical protein -
  DV527_RS04705 (DV527_04715) - 979230..979694 (-) 465 WP_037538133.1 low molecular weight protein-tyrosine-phosphatase -
  DV527_RS04710 (DV527_04720) - 979829..980032 (+) 204 WP_002482850.1 DUF1128 family protein -
  DV527_RS04715 (DV527_04725) - 980046..981284 (+) 1239 WP_041079969.1 aminopeptidase -
  DV527_RS04720 (DV527_04730) - 981498..982019 (+) 522 WP_037538134.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23684.19 Da        Isoelectric Point: 4.6997

>NTDB_id=304003 DV527_RS04690 WP_002482846.1 976569..977198(+) (vraR) [Staphylococcus saprophyticus strain 1A]
MPIKVLFVDDHEMVRIGISSYLSTQSDIDVVGEGKSGKDAIEKAHELKPDLILMDLLMDDMDGVEATEQVKKDLPNIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=304003 DV527_RS04690 WP_002482846.1 976569..977198(+) (vraR) [Staphylococcus saprophyticus strain 1A]
ATGCCGATTAAAGTATTATTTGTTGATGATCATGAAATGGTTCGAATAGGTATTTCTAGTTATTTATCCACACAATCTGA
TATAGATGTCGTAGGGGAAGGTAAGTCAGGAAAAGATGCAATCGAAAAAGCACATGAACTGAAACCGGACCTAATTTTAA
TGGATTTACTTATGGACGATATGGATGGTGTCGAAGCAACTGAACAAGTTAAAAAAGACTTGCCAAATATTAAAGTTGTC
ATGCTTACGAGTTATATTGAAGATAACGAAGTCTATCGTGCACTTGATTCCGGTGTAGATAGCTATATATTGAAAACAAC
AAGTGCTAGTGATATTGCTGAAGCGATTCGTAAGACTTACAATAATGAGTCAGTATTTGAAGCAGAAGTCCTAGTTAAAA
TGAGAAATAGGATGAAACAACGAGCTGAATTGTATGAAATGCTCACAGAACGTGAAATGGAGATTTTATTACTGATTGCT
AAAGGTTACTCTAACCAAGAGATTGCCAGCGCTTCACATATTACGATTAAAACAGTGAAAACGCATGTAAGTAATATCCT
AAGTAAATTAGAAGTTCAAGATAGAACTCAAGCCGTCATATATGCATTCCAGCACAATTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380HJV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

89.952

100

0.9

Multiple sequence alignment