Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DV527_RS04085 | Genome accession | NZ_CP031196 |
| Coordinates | 856383..856802 (+) | Length | 139 a.a. |
| NCBI ID | WP_011302684.1 | Uniprot ID | - |
| Organism | Staphylococcus saprophyticus strain 1A | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 851383..861802
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV527_RS04055 (DV527_04065) | atpD | 851499..852911 (+) | 1413 | WP_002482726.1 | F0F1 ATP synthase subunit beta | - |
| DV527_RS04060 (DV527_04070) | - | 852931..853335 (+) | 405 | WP_002482727.1 | F0F1 ATP synthase subunit epsilon | - |
| DV527_RS04065 (DV527_04075) | - | 853597..853830 (+) | 234 | WP_011302682.1 | DUF1146 family protein | - |
| DV527_RS04070 (DV527_04080) | murA | 853937..855202 (+) | 1266 | WP_145437471.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| DV527_RS04075 (DV527_04085) | fabZ | 855257..855694 (+) | 438 | WP_002482729.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| DV527_RS04080 (DV527_04090) | - | 855752..856192 (-) | 441 | WP_002482730.1 | YwpF-like family protein | - |
| DV527_RS04085 (DV527_04095) | ssb | 856383..856802 (+) | 420 | WP_011302684.1 | single-stranded DNA-binding protein | Machinery gene |
| DV527_RS04090 (DV527_04100) | - | 857228..857944 (+) | 717 | WP_041080784.1 | transglycosylase family protein | - |
| DV527_RS04095 (DV527_04105) | tenA | 858251..858940 (+) | 690 | WP_002482733.1 | thiaminase II | - |
| DV527_RS04100 (DV527_04110) | thiD | 858933..859754 (+) | 822 | WP_002482734.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| DV527_RS04105 (DV527_04115) | thiM | 859747..860538 (+) | 792 | WP_002482735.1 | hydroxyethylthiazole kinase | - |
| DV527_RS04110 (DV527_04120) | thiE | 860538..861176 (+) | 639 | WP_002482736.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 16059.43 Da Isoelectric Point: 7.7651
>NTDB_id=304000 DV527_RS04085 WP_011302684.1 856383..856802(+) (ssb) [Staphylococcus saprophyticus strain 1A]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV
Nucleotide
Download Length: 420 bp
>NTDB_id=304000 DV527_RS04085 WP_011302684.1 856383..856802(+) (ssb) [Staphylococcus saprophyticus strain 1A]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
60.87 |
99.281 |
0.604 |
| ssb | Staphylococcus aureus MW2 |
60.145 |
99.281 |
0.597 |