Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   DV527_RS00240 Genome accession   NZ_CP031196
Coordinates   49305..50930 (-) Length   541 a.a.
NCBI ID   WP_145437295.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain 1A     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 49778..57513 49305..50930 flank -1152


Gene organization within MGE regions


Location: 49305..57513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV527_RS00240 (DV527_00240) ccrB 49305..50930 (-) 1626 WP_145437295.1 cassette chromosome recombinase CcrB Machinery gene
  DV527_RS00245 (DV527_00245) ccrA 50952..52301 (-) 1350 WP_145437297.1 cassette chromosome recombinase CcrA Machinery gene
  DV527_RS00250 (DV527_00250) - 52472..52735 (-) 264 WP_145437299.1 hypothetical protein -
  DV527_RS00255 (DV527_00255) - 52801..54591 (-) 1791 WP_145437301.1 cassette chromosome replicative helicase -
  DV527_RS00260 (DV527_00260) - 54717..56147 (-) 1431 WP_145437303.1 DUF6038 family protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62176.01 Da        Isoelectric Point: 9.6020

>NTDB_id=303995 DV527_RS00240 WP_145437295.1 49305..50930(-) (ccrB) [Staphylococcus saprophyticus strain 1A]
MNEMKKKRIGGYIRVSTEKQVMGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMNRPELQRMLNDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDNPVIAEGKHTPIISQDLWDKVQARKKQVSKKPQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSNVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQENQVDVAALNHDIAYKQQQFDE
INTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDIANQINQLKQQQNQEKPSYDTKQIAALLQQIFQNVESMEKSQLKA
LYLTVIDRIDIRKDGSHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=303995 DV527_RS00240 WP_145437295.1 49305..50930(-) (ccrB) [Staphylococcus saprophyticus strain 1A]
ATGAATGAAATGAAGAAGAAGAGAATCGGAGGGTACATCCGCGTATCCACGGAAAAACAGGTAATGGGCTATAGCATAGA
GGGACAAATTACACAAATAGAGCAATATTGCCAATTTAACGGCTATGAACTTGTTGATATATATGCAGATCGGGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAATGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTACTTACAATCGTCGAAGAACTTCATCGTCAAAATGTTGAATT
TTTTAGCTTGTCTGAACGTATGGAAGTCAAAAATTCAACAGGGAAGTTAATGCTCCAGATACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACAATTTTAGAGAATATTTACACCGGACAACATCAAAGAGCTTTAGAGGGCTATTATCAAGGCAATCTT
CCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAATAC
AAAGATTGGAATGATAAACGACGTAAAGGCTTGAATGATAATCCAGTGATCGCTGAAGGCAAACACACACCTATTATTAG
TCAAGATTTATGGGATAAAGTACAAGCACGTAAGAAGCAAGTAAGCAAAAAGCCACAAGTACATGGTAAAGGAACCAATC
TTTTGACAGGAATAATTTTTTGCGAAAAATGTGGTGCGGCATATGCAGCTTCAAATACAACCAATACACTCAAAGACGGT
ACTAAAAAACGCATTCGGTATTATTCATGTAGTAACTTTCGCAACAAAGGATCAAATGTATGTTCAGCCAATAGTGTTAG
AGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTCGAAATAGTCAAAAGTGATAAAGTTATCAAACAAGTTGTCG
AACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCGCTCAATCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTCAATGATATTGCAAACCAAATTAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCATCTT
ACGATACGAAGCAAATCGCTGCCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGAAAAATCACAGCTCAAAGCA
TTATACCTTACGGTCATTGATCGTATTGATATTCGTAAAGATGGTAGTCATAAAAAGCAGTTCTATGTCACACTCAAGCT
CAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTGC
CTCAAACACTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(294-359)

Recombinase (Recombinase)

(179-279)

Resolvase, N terminal domain (Resolvase)

(11-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

79.52

100

0.797

Multiple sequence alignment