Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VC395_RS01280 Genome accession   NC_012582
Coordinates   259011..259685 (+) Length   224 a.a.
NCBI ID   WP_000053959.1    Uniprot ID   Q9KVC9
Organism   Vibrio cholerae O395     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 254011..264685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC395_RS01260 (VC395_0245) - 254136..255083 (-) 948 WP_000076199.1 Kdo(2)-lipid IV(A) acyltransferase -
  VC395_RS01265 (VC395_0246) slmA 255089..255679 (-) 591 WP_000918350.1 nucleoid occlusion factor SlmA -
  VC395_RS19695 - 255635..255772 (+) 138 WP_001889830.1 hypothetical protein -
  VC395_RS01270 (VC395_0247) coaBC 255838..257037 (-) 1200 WP_001190972.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  VC395_RS01275 (VC395_0248) - 257220..258899 (+) 1680 WP_000953041.1 methyl-accepting chemotaxis protein -
  VC395_RS01280 (VC395_0249) radC 259011..259685 (+) 675 WP_000053959.1 DNA repair protein RadC Machinery gene
  VC395_RS01285 (VC395_0250) rpmB 259980..260216 (+) 237 WP_000091952.1 50S ribosomal protein L28 -
  VC395_RS01290 (VC395_0251) rpmG 260230..260397 (+) 168 WP_001051801.1 50S ribosomal protein L33 -
  VC395_RS01295 (VC395_0252) - 260624..261106 (+) 483 WP_001266257.1 hypothetical protein -
  VC395_RS01300 (VC395_0253) mutM 261116..261925 (+) 810 WP_001114647.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  VC395_RS01305 (VC395_0254) coaD 262022..262516 (-) 495 WP_000078888.1 pantetheine-phosphate adenylyltransferase -
  VC395_RS01310 (VC395_0255) - 262627..263664 (+) 1038 WP_000735619.1 glycosyltransferase family 9 protein -
  VC395_RS01315 (VC395_0256) - 263726..264505 (-) 780 WP_000042993.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25246.07 Da        Isoelectric Point: 7.9636

>NTDB_id=30382 VC395_RS01280 WP_000053959.1 259011..259685(+) (radC) [Vibrio cholerae O395]
MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=30382 VC395_RS01280 WP_000053959.1 259011..259685(+) (radC) [Vibrio cholerae O395]
ATGAGCCTAAAACAGTTACCCACCGAATCCATGCCGCGCGAAAAATTGCTGCAACGCGGTCCACAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACCCAAGGCATGAACGTGCTCGCCTTAGCTGATCTGCTGCTGCGCGATT
TTGGATCGCTGCGCGCACTGTTTTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTT
CAATTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA
GCAAACCAAACTTTATTTATCGAGCGTGCTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG
GCGCTGCACCATAATGCCGCTGCGGTAATACTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGTGGCTGGATATAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-79)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KVC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.704

96.429

0.518
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.379

Multiple sequence alignment