Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DVJ83_RS02110 Genome accession   NZ_CP031158
Coordinates   403199..405442 (+) Length   747 a.a.
NCBI ID   WP_114671214.1    Uniprot ID   A0A345IEM8
Organism   Deinococcus wulumuqiensis strain NEB 479     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398199..410442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVJ83_RS02090 (DVJ83_02090) - 399412..400164 (-) 753 WP_017869603.1 TSUP family transporter -
  DVJ83_RS02095 (DVJ83_02095) - 400228..400647 (+) 420 WP_114671212.1 organic hydroperoxide resistance protein -
  DVJ83_RS02100 (DVJ83_02100) gatA 400719..402167 (-) 1449 WP_114672711.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  DVJ83_RS19020 - 402216..402767 (+) 552 WP_162865321.1 hypothetical protein -
  DVJ83_RS02105 (DVJ83_02105) comEA 402801..403205 (+) 405 WP_114671213.1 ComEA family DNA-binding protein Machinery gene
  DVJ83_RS02110 (DVJ83_02110) comEC 403199..405442 (+) 2244 WP_114671214.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DVJ83_RS02115 (DVJ83_02115) - 405508..406509 (+) 1002 WP_114671215.1 SIS domain-containing protein -
  DVJ83_RS02125 (DVJ83_02125) - 406938..407693 (+) 756 WP_114671216.1 serine/threonine-protein kinase -
  DVJ83_RS02130 (DVJ83_02130) - 407894..408121 (-) 228 WP_114671217.1 hypothetical protein -
  DVJ83_RS02135 (DVJ83_02135) msrA 408121..408699 (-) 579 WP_114672712.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 77897.15 Da        Isoelectric Point: 10.5234

>NTDB_id=303803 DVJ83_RS02110 WP_114671214.1 403199..405442(+) (comEC) [Deinococcus wulumuqiensis strain NEB 479]
MVTGHDPQTGEVRPPPPVSRARGGRLAWSVPLVLGMVGGILLQLGLSWGALALLAGTLLSVLDARPLLASLVLLGAVLGF
GSAHLQAREPDRMAPWVGALVTLRGHWDGQFLTLDDPAARVALAPKPKQGPGELVVSGRLIRPEGRRTPGGFDQAAWLRS
QGGLLVPTPKTVLVRAEVKRHVPEQGLRGWFRRGLSAGLPSRPAALMTAVELGERGDIGRESFDEGFSVRDAFARAGLAH
LMALSGQNVALLTGTLIWLLGALGARPVWKYGLPAALLPVYLLLLVGATPSITRAVLMGGAALLALMVGRGRLDPLGVVA
LAAVACLLLFPLWLLDIGFQLSFLAVLGLLLSGRLAERLPARWPRALRLALSATVLAELATLPVIAHTFGELPLVGLPAN
LLAAPLMAALVPLGFVAGLLGPAGGLVNWAVAPLASALLWVAQTFGSAPVLTWGNLGAGGFVAYALAAAAGAGWLLGRVR
GQAALTAALACAALTWLPGQLRPPRELVFLDVGQGDATLLRVPGLTMLIDGGGSVGSDYDVGRGTVLPALRALGVRKLDV
VVATHADTDHVEGLSSVLRGLPVGELWVGHLKKPGEDPVLDAILSAAHARKVPVRELRRGDRVTAGPVSVTALWPAGHVW
STEDNDNSVALRVEDGEFRAALLGDLPDPAEALVGAGDLTLLKAAHHGSRFSTGEALLRQTTPSDVLISVGRNTYGHPTR
AVLDRIAAAGAKVWRTDELGTVRWPLP

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=303803 DVJ83_RS02110 WP_114671214.1 403199..405442(+) (comEC) [Deinococcus wulumuqiensis strain NEB 479]
GTGGTGACGGGTCACGACCCGCAGACGGGCGAGGTGCGGCCTCCTCCGCCCGTCTCCCGTGCCCGGGGCGGGCGGCTGGC
GTGGTCGGTGCCGCTGGTTCTGGGGATGGTGGGCGGGATTTTGCTGCAGCTGGGGCTGTCCTGGGGCGCTCTGGCGCTGC
TGGCCGGAACGCTGCTGAGCGTGCTCGACGCCCGTCCGCTGTTGGCCTCGCTGGTGCTGCTCGGCGCGGTGCTCGGCTTC
GGCTCGGCGCACTTGCAGGCCCGCGAACCGGACCGCATGGCCCCCTGGGTCGGCGCCCTCGTGACGCTGCGCGGGCACTG
GGACGGGCAGTTTCTGACGCTGGACGACCCGGCGGCGCGGGTGGCCCTCGCGCCCAAGCCCAAACAGGGACCGGGCGAAC
TGGTGGTTTCTGGTCGCCTGATTCGCCCGGAAGGACGGCGCACGCCCGGCGGTTTCGACCAAGCGGCGTGGCTGCGCTCG
CAGGGCGGGCTGCTGGTGCCCACCCCGAAAACGGTGCTGGTGCGGGCCGAGGTCAAGCGGCACGTTCCGGAACAGGGGCT
GCGCGGCTGGTTTCGCCGGGGCCTGAGCGCGGGGCTGCCTTCCCGACCCGCCGCGCTGATGACGGCGGTGGAACTGGGAG
AACGCGGCGACATCGGGCGCGAGAGCTTCGACGAGGGCTTTTCGGTGCGCGACGCTTTCGCCCGCGCAGGGCTGGCGCAC
CTGATGGCGCTGAGCGGGCAGAACGTGGCGCTGCTGACCGGCACGCTCATCTGGCTGCTCGGCGCTCTGGGGGCGCGGCC
CGTATGGAAGTATGGCCTGCCCGCCGCGCTGCTTCCGGTGTATCTGCTGCTGCTGGTCGGTGCGACCCCCAGCATCACCC
GCGCGGTGCTGATGGGCGGGGCGGCGCTTCTGGCGCTGATGGTGGGGCGGGGCCGACTCGACCCGCTGGGGGTGGTCGCG
CTGGCGGCGGTGGCCTGCCTGCTGCTGTTTCCACTGTGGCTGCTGGACATCGGGTTCCAGCTGTCTTTTCTGGCGGTGCT
GGGCCTGCTGCTCTCGGGCCGGCTGGCCGAGCGGCTCCCGGCGCGCTGGCCGCGTGCGCTGCGGCTGGCGCTCTCGGCCA
CCGTCCTGGCCGAACTCGCCACGCTGCCCGTCATCGCCCACACCTTCGGGGAACTGCCGCTGGTGGGGCTGCCGGCCAAC
CTGCTCGCCGCACCCCTCATGGCCGCGCTGGTGCCGCTGGGGTTTGTCGCGGGGCTGCTGGGTCCGGCGGGGGGACTGGT
GAACTGGGCGGTGGCCCCCCTCGCGTCCGCGCTGCTGTGGGTCGCGCAGACCTTCGGCAGTGCCCCGGTGCTGACCTGGG
GCAACCTCGGCGCGGGCGGCTTTGTCGCCTATGCACTGGCGGCAGCGGCGGGGGCAGGCTGGTTGCTGGGCCGGGTGCGC
GGACAGGCGGCGCTGACGGCAGCCCTCGCCTGCGCCGCGCTGACCTGGCTGCCCGGACAGCTTCGCCCGCCCCGCGAACT
GGTGTTTCTGGACGTGGGCCAGGGCGACGCGACCCTGCTGCGGGTGCCGGGTCTGACGATGCTCATCGACGGCGGCGGCT
CGGTCGGCAGCGACTACGACGTGGGCCGGGGCACCGTGCTGCCTGCTCTGCGGGCGCTGGGCGTGCGAAAACTGGACGTG
GTGGTGGCGACGCACGCCGACACCGACCATGTCGAGGGCCTGTCCAGCGTGCTGCGGGGCCTTCCGGTGGGCGAACTGTG
GGTGGGCCACCTCAAGAAGCCGGGTGAAGACCCGGTGCTGGACGCCATTCTCTCGGCTGCCCACGCAAGGAAGGTCCCGG
TGCGCGAGCTTCGCCGGGGCGACCGGGTGACGGCTGGCCCGGTCAGCGTGACGGCCCTCTGGCCCGCCGGACACGTCTGG
TCCACCGAGGACAACGACAACTCGGTGGCGCTGCGGGTGGAAGACGGCGAGTTCCGGGCCGCGCTGCTCGGCGACCTGCC
CGACCCCGCCGAGGCCCTGGTCGGCGCGGGCGACCTCACGCTGCTCAAGGCCGCGCACCACGGCAGCCGCTTCAGCACCG
GCGAGGCGCTGCTGCGCCAGACGACTCCCAGCGACGTGCTCATCAGTGTGGGGCGCAACACCTACGGCCACCCCACGCGG
GCCGTGCTGGACCGCATCGCCGCTGCCGGGGCGAAGGTCTGGCGAACCGACGAGCTGGGCACGGTGCGCTGGCCTTTGCC
CTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(229-474)

Beta-lactamase superfamily domain (Lactamase_B_2)

(552-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345IEM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

85.16

100

0.853

Multiple sequence alignment