Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DVJ83_RS02105 Genome accession   NZ_CP031158
Coordinates   402801..403205 (+) Length   134 a.a.
NCBI ID   WP_114671213.1    Uniprot ID   -
Organism   Deinococcus wulumuqiensis strain NEB 479     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397801..408205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVJ83_RS02085 (DVJ83_02085) - 397932..399155 (-) 1224 WP_114671211.1 transposase -
  DVJ83_RS02090 (DVJ83_02090) - 399412..400164 (-) 753 WP_017869603.1 TSUP family transporter -
  DVJ83_RS02095 (DVJ83_02095) - 400228..400647 (+) 420 WP_114671212.1 organic hydroperoxide resistance protein -
  DVJ83_RS02100 (DVJ83_02100) gatA 400719..402167 (-) 1449 WP_114672711.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  DVJ83_RS19020 - 402216..402767 (+) 552 WP_162865321.1 hypothetical protein -
  DVJ83_RS02105 (DVJ83_02105) comEA 402801..403205 (+) 405 WP_114671213.1 ComEA family DNA-binding protein Machinery gene
  DVJ83_RS02110 (DVJ83_02110) comEC 403199..405442 (+) 2244 WP_114671214.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DVJ83_RS02115 (DVJ83_02115) - 405508..406509 (+) 1002 WP_114671215.1 SIS domain-containing protein -
  DVJ83_RS02125 (DVJ83_02125) - 406938..407693 (+) 756 WP_114671216.1 serine/threonine-protein kinase -
  DVJ83_RS02130 (DVJ83_02130) - 407894..408121 (-) 228 WP_114671217.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 13894.13 Da        Isoelectric Point: 9.7755

>NTDB_id=303802 DVJ83_RS02105 WP_114671213.1 402801..403205(+) (comEA) [Deinococcus wulumuqiensis strain NEB 479]
MPPQERVWQALLAAGTLLVGALTLGPALLPRPQVPSVTRTALPPVQAGVQAGGEAGTPGEPPTYPATPSVTPLISGRVDL
NTASAEQLEALPRVGPALAKKIIAGRPYRSLDDLDRVKGVGEATLRDLAPLVKW

Nucleotide


Download         Length: 405 bp        

>NTDB_id=303802 DVJ83_RS02105 WP_114671213.1 402801..403205(+) (comEA) [Deinococcus wulumuqiensis strain NEB 479]
ATGCCCCCTCAAGAACGGGTCTGGCAAGCTCTTCTGGCTGCTGGCACGCTGCTGGTCGGCGCCCTGACCCTCGGCCCCGC
GCTGCTGCCGCGCCCGCAGGTGCCTTCGGTGACCCGCACGGCGCTGCCCCCGGTCCAGGCGGGGGTGCAGGCCGGGGGAG
AGGCCGGAACGCCGGGCGAGCCGCCGACCTATCCGGCCACCCCGAGTGTGACTCCCCTCATCAGCGGGCGGGTGGACCTG
AACACGGCGAGTGCGGAACAACTGGAAGCCCTGCCCCGCGTCGGCCCGGCCCTGGCGAAGAAGATCATTGCCGGGCGCCC
CTACCGCTCCCTCGACGACCTCGACCGCGTGAAGGGCGTCGGGGAGGCCACCCTGCGCGACCTCGCCCCGCTGGTGAAGT
GGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(77-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

76.866

100

0.769

Multiple sequence alignment