Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KORDIASMS9_RS03560 Genome accession   NZ_CP031153
Coordinates   779665..781026 (+) Length   453 a.a.
NCBI ID   WP_114901517.1    Uniprot ID   A0A345GW30
Organism   Kordia sp. SMS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 774665..786026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KORDIASMS9_RS03535 (KORDIASMS9_00728) - 775371..776180 (-) 810 WP_114901514.1 glycogen/starch synthase -
  KORDIASMS9_RS03540 (KORDIASMS9_00729) panC 776286..777134 (+) 849 WP_114901515.1 pantoate--beta-alanine ligase -
  KORDIASMS9_RS03545 (KORDIASMS9_00730) panD 777162..777512 (+) 351 WP_114901516.1 aspartate 1-decarboxylase -
  KORDIASMS9_RS03550 (KORDIASMS9_00731) - 777513..778475 (+) 963 WP_371412753.1 YbhN family protein -
  KORDIASMS9_RS03555 (KORDIASMS9_00732) - 778506..779663 (+) 1158 WP_240321118.1 alpha/beta hydrolase -
  KORDIASMS9_RS03560 (KORDIASMS9_00733) radA 779665..781026 (+) 1362 WP_114901517.1 DNA repair protein RadA Machinery gene
  KORDIASMS9_RS03565 (KORDIASMS9_00734) - 781102..782136 (-) 1035 WP_114901518.1 NADP(H)-dependent aldo-keto reductase -
  KORDIASMS9_RS03570 (KORDIASMS9_00735) - 782478..783239 (-) 762 WP_114901519.1 exodeoxyribonuclease III -
  KORDIASMS9_RS03575 (KORDIASMS9_00736) - 783413..785218 (-) 1806 WP_114901520.1 GNAT family N-acyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49921.42 Da        Isoelectric Point: 7.6224

>NTDB_id=303780 KORDIASMS9_RS03560 WP_114901517.1 779665..781026(+) (radA) [Kordia sp. SMS9]
MAKVKTTFFCQNCGTQFSKWQGQCSSCKQWNTIVEEVIQKEVKANWQQQEKGRTTRVAKPTLVHEISSATEKRLPTTDQE
LDRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERISQKSSNCFVLTETKTQNIFKQ
IAEVKPDIVVIDSIQTLHSDYIESSAGSISQIRECTTELIKFAKESGIPVFLIGHITKDGNIAGPKILEHMVDTVLQFEG
DRNHVYRILRSLKNRFGSTSELGIYEMLSDGLREVSNPSEILISQNADELSGTAIAATLEGARPLMIEIQALVSTAVYGT
PQRSTTGYNAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGISIDDTAIDLAVIAAILSSNEDEEISKTNCFAAEIGLAGE
IRPVNRIDQRILEAEKLGFTTFFASKHNKISLKNTKINIVLISRIEDLVANLF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=303780 KORDIASMS9_RS03560 WP_114901517.1 779665..781026(+) (radA) [Kordia sp. SMS9]
ATGGCAAAAGTAAAAACGACCTTTTTCTGTCAAAACTGTGGCACACAATTTTCAAAATGGCAAGGACAATGTTCTTCCTG
CAAACAATGGAATACGATTGTGGAAGAAGTCATTCAAAAAGAAGTAAAAGCCAATTGGCAACAACAAGAAAAAGGGCGTA
CTACACGTGTTGCAAAACCAACATTGGTTCACGAAATAAGTTCGGCTACTGAAAAACGCTTACCAACGACCGATCAAGAA
CTGGACAGAGTTCTTGGTGGCGGCATTGTACCTGGATCGTTAATTTTGCTCGGTGGCGAACCTGGCATTGGAAAAAGCAC
CTTGTTGCTTCAAATTTCCTTAAAATTGCCCTATAAAACCTTGTATGTTTCTGGTGAGGAAAGTCAGAAACAAATAAAAA
TGCGTGCCGAACGCATCAGTCAAAAAAGCTCCAATTGTTTTGTGTTGACCGAAACCAAAACACAAAATATCTTCAAGCAA
ATTGCAGAAGTCAAACCTGATATTGTCGTCATTGATTCCATTCAAACCTTACATTCAGACTATATTGAATCGTCTGCGGG
AAGCATTTCACAAATCCGAGAATGTACTACGGAATTGATCAAATTTGCCAAAGAAAGTGGCATTCCTGTATTTTTGATCG
GACACATTACAAAAGATGGAAATATTGCGGGACCTAAAATTTTGGAACACATGGTCGATACGGTTTTACAGTTTGAAGGC
GATCGAAATCATGTCTATCGAATTTTACGTTCACTAAAAAATCGTTTCGGTTCTACCTCCGAATTGGGAATTTACGAAAT
GCTCTCCGATGGTTTGCGCGAAGTCAGCAATCCGTCCGAAATCCTCATTTCACAAAATGCTGATGAACTCAGCGGAACCG
CCATTGCAGCTACTTTGGAAGGTGCACGACCGTTAATGATCGAAATTCAAGCGTTGGTGAGTACAGCTGTATACGGAACG
CCGCAAAGAAGCACCACAGGCTACAATGCCAAACGTTTGAATATGTTGTTGGCCGTGTTGGAAAAACGCGCAGGTTTTAA
ATTGGCCGCAAAAGATGTTTTTCTAAATATTACAGGCGGAATCAGTATTGATGACACTGCGATTGATTTAGCCGTGATTG
CTGCCATTCTTTCTAGCAATGAAGATGAAGAAATTTCGAAAACCAATTGTTTTGCTGCGGAAATCGGATTGGCAGGGGAA
ATTCGTCCCGTCAATCGAATTGATCAACGTATTTTAGAAGCTGAAAAACTAGGGTTTACCACATTTTTTGCTTCCAAACA
CAATAAAATCTCCTTGAAAAACACCAAAATAAACATCGTACTCATCTCAAGAATTGAAGATTTGGTAGCAAACTTATTTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(339-428)

AAA domain (AAA_25)

(65-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345GW30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.246

100

0.486
  radA Streptococcus mitis NCTC 12261

48.246

100

0.486
  radA Streptococcus pneumoniae Rx1

48.246

100

0.486
  radA Streptococcus pneumoniae R6

48.246

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.486
  radA Streptococcus mitis SK321

48.026

100

0.483
  radA Bacillus subtilis subsp. subtilis str. 168

49.884

95.143

0.475

Multiple sequence alignment