Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DVB73_RS15165 Genome accession   NZ_CP031146
Coordinates   3312503..3314722 (+) Length   739 a.a.
NCBI ID   WP_016393373.1    Uniprot ID   A0AAD0QXY6
Organism   Pseudomonas plecoglossicida strain XSDHY-P     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3307503..3319722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVB73_RS15150 (DVB73_15145) - 3309847..3311115 (-) 1269 WP_016393376.1 malic enzyme-like NAD(P)-binding protein -
  DVB73_RS15155 (DVB73_15150) - 3311296..3312117 (-) 822 WP_016393375.1 thermonuclease family protein -
  DVB73_RS15160 (DVB73_15155) rpmE 3312120..3312335 (-) 216 WP_016393374.1 50S ribosomal protein L31 -
  DVB73_RS15165 (DVB73_15160) priA 3312503..3314722 (+) 2220 WP_016393373.1 primosomal protein N' Machinery gene
  DVB73_RS15175 (DVB73_15170) argS 3314913..3316649 (+) 1737 WP_016393372.1 arginine--tRNA ligase -
  DVB73_RS15180 (DVB73_15175) - 3316651..3317349 (+) 699 WP_016393371.1 SPOR domain-containing protein -
  DVB73_RS15185 (DVB73_15180) - 3317395..3317814 (-) 420 WP_016393370.1 TM2 domain-containing protein -
  DVB73_RS15190 (DVB73_15185) - 3317984..3318613 (+) 630 WP_016393369.1 C40 family peptidase -
  DVB73_RS15195 (DVB73_15190) pilT 3318695..3319693 (-) 999 WP_016393368.1 PilT/PilU family type 4a pilus ATPase Machinery gene

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82389.92 Da        Isoelectric Point: 8.5590

>NTDB_id=303765 DVB73_RS15165 WP_016393373.1 3312503..3314722(+) (priA) [Pseudomonas plecoglossicida strain XSDHY-P]
MSDVILRLALPSPLRRLFDYRAPAGMARQALAPGMRVRVPFGRREMIGVLVEVCDHSEVPADKLKPAIALLDPVTPIPAA
LFKLCLWTAQYYQHSLGDTLSWALPTLLRQGEPAEMRQERFWHVTPGARLDDPRIARAPRQRDALKTLSQHPHGVAHSLL
TKLNLNKDSLDLLLAKELVQVEVRRQRPAARHEHWLAQPELPLNEEQRDAFDTVREGFGGFSAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRERLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIIDEEHDGSYKQQEGLRYHARDLALVRAHQENIPILLGSATPSLETLHNALTGRYRLLRMNQRAGGAHPPRMLRLDVKS
LPLDSGISGPLQQAIRQTLEAGQQVLVFLNRRGFAPTLLCHDCGWLSECPRCDARMTVHQRSGVLRCHHCGYDERLPHQC
PKCNHVDLRPVGAGTERAEERLKVLFPDYPILRVDRDSTARKDAMHTLFSTIQRGQPSILVGTQMLAKGHHFPRVTLVAI
LDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEAGKVIIQTHLSDHPLLVQLTEQGYFAFAEQALDERRAAGLPPYSHL
ALLRAEAHKPGQAEGFLDEACSAAERLVAQQQLAGIELLGPVPAPMERKAGRFRAQLLIQANTRAPLHRLISAWLLVLEQ
MPSGRQVRWSLDVDPVDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=303765 DVB73_RS15165 WP_016393373.1 3312503..3314722(+) (priA) [Pseudomonas plecoglossicida strain XSDHY-P]
GTGTCCGACGTCATCCTGCGCCTTGCCCTGCCCTCCCCCCTGCGTCGCCTGTTCGACTATCGGGCGCCGGCGGGCATGGC
GCGCCAGGCTCTGGCACCGGGCATGCGGGTGCGCGTGCCGTTCGGTCGCCGCGAGATGATCGGCGTACTGGTGGAGGTGT
GCGACCACAGCGAAGTCCCGGCCGACAAGCTCAAGCCGGCCATCGCCCTGCTCGACCCGGTGACGCCGATACCCGCCGCG
CTGTTCAAGCTGTGCCTGTGGACCGCCCAGTACTACCAGCACAGCCTGGGCGACACCCTGAGCTGGGCGCTGCCGACCCT
GCTGCGCCAGGGGGAACCGGCCGAGATGCGCCAGGAGCGTTTCTGGCACGTGACGCCCGGCGCCCGTCTGGATGACCCAC
GCATCGCCCGTGCGCCGCGCCAGCGCGATGCCTTGAAGACGCTTTCCCAGCACCCCCATGGCGTGGCTCACAGCCTGCTG
ACCAAGCTCAACCTGAACAAGGACAGCCTCGACCTGCTGCTGGCCAAGGAGCTGGTGCAGGTGGAAGTCCGCCGCCAGCG
GCCGGCAGCACGTCATGAGCACTGGCTGGCACAGCCGGAGCTGCCGCTCAACGAAGAGCAGCGCGACGCCTTCGATACGG
TGCGCGAGGGCTTTGGCGGTTTCAGCGCCTTTCTCCTGGCTGGGGTCACCGGCAGCGGCAAGACCGAGGTGTACCTGCAG
CTCATCCGCGAAACCCTCGAAGCCGGCAAGCAGGCACTGGTGCTGATTCCCGAGATCAACCTCGGCCCGCAGACCCTGGC
GCGCTTCGAGCAGCGCTTCAACGCGCGCATTGCCCTGCTGCACTCGGCCGTGAACGATCGCGAGCGCCTCGATGCCTGGC
TGGCGGCACGTGACGGCGAAGCCGACATCATCATCGGCACCCGTTCCGCGCTGTTCACGCCCATGAAAAACCCAGGCCTG
ATCATCATCGACGAGGAGCACGACGGCTCCTATAAACAGCAGGAAGGCCTGCGTTACCATGCCCGCGACCTGGCGCTGGT
GCGCGCCCACCAGGAAAACATTCCGATCCTGCTAGGCTCCGCCACCCCGTCGCTGGAAACCCTGCACAATGCCCTGACCG
GCCGCTACCGCCTGCTGCGCATGAACCAGCGCGCCGGTGGCGCACACCCACCACGCATGCTGCGCCTGGACGTGAAGAGC
CTGCCGCTGGACAGCGGCATCAGCGGCCCGCTGCAACAGGCCATCCGCCAGACCCTGGAAGCCGGCCAGCAAGTGCTGGT
GTTCCTCAACCGCCGTGGCTTCGCCCCGACCTTGCTGTGCCATGACTGTGGCTGGCTGTCCGAGTGCCCTCGTTGCGATG
CACGCATGACCGTGCACCAACGCTCCGGCGTGCTGCGCTGCCACCACTGCGGCTACGACGAGCGCTTGCCGCATCAGTGT
CCCAAGTGCAACCACGTGGACCTGCGCCCGGTCGGCGCTGGCACGGAACGCGCCGAAGAGCGCCTGAAGGTGTTGTTCCC
CGACTATCCGATCCTGCGTGTCGATCGCGACAGCACCGCACGCAAGGACGCCATGCACACCCTGTTCAGCACCATCCAGC
GCGGCCAGCCGAGCATCCTGGTCGGCACCCAGATGCTGGCCAAGGGGCACCACTTCCCGCGGGTAACGCTGGTGGCGATC
CTCGATGCCGACGGCGGGCTGTTCTCCGGCGACTTTCGCGCCAGCGAGCGCATGGCCCAGCTGATCGTCCAGGTCGCCGG
GCGTGCCGGTCGCGCCGAAGAGGCCGGCAAGGTCATCATCCAGACCCACCTCTCCGACCACCCACTGCTGGTGCAATTGA
CCGAGCAAGGTTACTTCGCCTTCGCCGAGCAGGCGCTGGACGAACGCCGCGCCGCCGGCCTGCCGCCGTACTCGCACCTG
GCCCTGCTGCGCGCCGAAGCACACAAGCCTGGCCAGGCCGAAGGTTTCCTCGACGAAGCCTGCAGTGCGGCGGAGCGGCT
GGTGGCGCAGCAACAGCTGGCGGGCATCGAACTGCTGGGGCCGGTACCCGCTCCGATGGAGCGCAAGGCCGGGCGTTTTC
GTGCACAACTGTTGATCCAGGCCAACACCCGGGCACCCTTGCATCGACTGATCAGCGCCTGGTTGCTAGTGTTGGAACAG
ATGCCGAGCGGGCGCCAGGTACGTTGGTCGCTGGATGTGGATCCGGTAGACCTGTACTGA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(636-735)

DEAD/DEAH box helicase (DEAD)

(207-368)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

48.575

99.729

0.484

Multiple sequence alignment