Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   U12A_RS16820 Genome accession   NZ_CP035476
Coordinates   2868053..2868790 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain U12A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2863053..2873790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U12A_RS16805 (U12A_02742) clpC 2863507..2866080 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  U12A_RS16810 (U12A_02743) yfiH 2866210..2866941 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  U12A_RS16815 (U12A_02744) rluD 2866938..2867918 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  U12A_RS16820 (U12A_02745) comL 2868053..2868790 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  U12A_RS16825 (U12A_02746) raiA 2869060..2869401 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  U12A_RS16830 pheL 2869505..2869552 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  U12A_RS16835 (U12A_02747) pheA 2869651..2870811 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  U12A_RS16840 (U12A_02748) tyrA 2870854..2871975 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  U12A_RS16845 (U12A_02749) aroF 2871986..2873056 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  U12A_RS16850 (U12A_02750) yfiL 2873266..2873631 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=303643 U12A_RS16820 WP_000197686.1 2868053..2868790(+) (comL) [Escherichia coli strain U12A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=303643 U12A_RS16820 WP_000197686.1 2868053..2868790(+) (comL) [Escherichia coli strain U12A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376