Detailed information NTG0030364

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: XFASM12_RS09925
• Genome accession: NC_010513
• Coordinates: 2215997..2217409 (-)
• Length: 470 a.a.
• NCBI ID: WP_020851962.1
• Uniprot ID: A0A9Q4QU34
• Organism: Xylella fastidiosa M12
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2210997..2222409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XFASM12_RS09910 (Xfasm12_2109)	-	2211139..2211588 (+)	450	WP_012338101.1	pilin	-
XFASM12_RS11970 (Xfasm12_2110)	-	2211830..2212057 (-)	228	WP_012338102.1	hypothetical protein	-
XFASM12_RS09915 (Xfasm12_2112)	-	2212890..2213330 (+)	441	WP_012338104.1	pilin	-
XFASM12_RS09920 (Xfasm12_2114)	pilB	2214170..2215903 (+)	1734	WP_012338105.1	type IV-A pilus assembly ATPase PilB	Machinery gene
XFASM12_RS09925 (Xfasm12_2115)	pilR	2215997..2217409 (-)	1413	WP_020851962.1	sigma-54 dependent transcriptional regulator	Regulator
XFASM12_RS09930 (Xfasm12_2116)	-	2217596..2219206 (-)	1611	WP_004084601.1	ATP-binding protein	-
XFASM12_RS09935 (Xfasm12_2117)	sucC	2219461..2220624 (+)	1164	WP_004084603.1	ADP-forming succinate--CoA ligase subunit beta	-
XFASM12_RS09940 (Xfasm12_2118)	sucD	2220653..2221525 (+)	873	WP_004084605.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51368.35 Da
• Isoelectric Point: 7.2158

>NTDB_id=30364 XFASM12_RS09925 WP_020851962.1 2215997..2217409(-) (pilR) [Xylella fastidiosa M12]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERVGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASALVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=30364 XFASM12_RS09925 WP_020851962.1 2215997..2217409(-) (pilR) [Xylella fastidiosa M12]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGTT
TCCGTCACGACTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGTTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCTCACACGCATGGGCGGGCGGTTCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTTCCGATTGTGCCTGTGGACGCATCGGCATTGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAAAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCATTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.635	99.787	0.585
pilR	Acinetobacter baumannii strain A118	46.822	100	0.47