Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BLDA23_RS20145 Genome accession   NZ_CP031126
Coordinates   3811854..3812543 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus licheniformis strain 0DA23-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3806854..3817543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLDA23_RS20110 (BLDA23_20110) - 3807028..3807504 (-) 477 WP_003185711.1 flagellar protein FlgN -
  BLDA23_RS20115 (BLDA23_20115) flgM 3807523..3807789 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  BLDA23_RS20120 (BLDA23_20120) - 3807869..3808288 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  BLDA23_RS20125 (BLDA23_20125) comFC 3808347..3809081 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  BLDA23_RS20130 (BLDA23_20130) - 3809038..3809322 (-) 285 WP_003185718.1 competence protein ComFB -
  BLDA23_RS20135 (BLDA23_20135) comFA 3809377..3810771 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  BLDA23_RS20140 (BLDA23_20140) - 3810892..3811734 (-) 843 WP_003185726.1 DegV family protein -
  BLDA23_RS20145 (BLDA23_20145) degU 3811854..3812543 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  BLDA23_RS20150 (BLDA23_20150) degS 3812625..3813782 (-) 1158 WP_003185733.1 histidine kinase Regulator
  BLDA23_RS20155 (BLDA23_20155) - 3813996..3814634 (+) 639 WP_003185736.1 YigZ family protein -
  BLDA23_RS20160 (BLDA23_20160) - 3814649..3815722 (+) 1074 WP_017473894.1 LCP family protein -
  BLDA23_RS20165 (BLDA23_20165) - 3815807..3816181 (-) 375 WP_003185738.1 hypothetical protein -
  BLDA23_RS20170 (BLDA23_20170) - 3816301..3817365 (-) 1065 WP_003185739.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=303569 BLDA23_RS20145 WP_003185730.1 3811854..3812543(-) (degU) [Bacillus licheniformis strain 0DA23-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=303569 BLDA23_RS20145 WP_003185730.1 3811854..3812543(-) (degU) [Bacillus licheniformis strain 0DA23-1]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTTA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGGGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAGGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTCACAAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment