Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   BLDA23_RS18295 Genome accession   NZ_CP031126
Coordinates   3453537..3453677 (-) Length   46 a.a.
NCBI ID   WP_003184860.1    Uniprot ID   P69890
Organism   Bacillus licheniformis strain 0DA23-1     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448537..3458677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLDA23_RS18270 (BLDA23_18270) - 3448857..3449246 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  BLDA23_RS18275 (BLDA23_18275) comA 3449263..3449901 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  BLDA23_RS18280 (BLDA23_18280) comP 3449988..3452288 (-) 2301 WP_009329509.1 ATP-binding protein Regulator
  BLDA23_RS18285 (BLDA23_18285) comX 3452290..3452463 (-) 174 WP_009329510.1 competence pheromone ComX -
  BLDA23_RS18290 (BLDA23_18290) - 3452467..3453348 (-) 882 WP_009329511.1 polyprenyl synthetase family protein -
  BLDA23_RS18295 (BLDA23_18295) degQ 3453537..3453677 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  BLDA23_RS18305 (BLDA23_18305) - 3454163..3454510 (+) 348 WP_009329512.1 hypothetical protein -
  BLDA23_RS18310 (BLDA23_18310) - 3454553..3455773 (-) 1221 WP_003184864.1 HDOD domain-containing protein -
  BLDA23_RS18315 (BLDA23_18315) - 3455952..3457421 (-) 1470 WP_003184866.1 nicotinate phosphoribosyltransferase -
  BLDA23_RS18320 (BLDA23_18320) - 3457439..3457990 (-) 552 WP_003184868.1 isochorismatase family cysteine hydrolase -
  BLDA23_RS18325 (BLDA23_18325) - 3458175..3458576 (-) 402 WP_003184870.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5747.56 Da        Isoelectric Point: 8.4596

>NTDB_id=303562 BLDA23_RS18295 WP_003184860.1 3453537..3453677(-) (degQ) [Bacillus licheniformis strain 0DA23-1]
MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTYLKTS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=303562 BLDA23_RS18295 WP_003184860.1 3453537..3453677(-) (degQ) [Bacillus licheniformis strain 0DA23-1]
GTGGAAAAGCAACAAATTGAAGAATTAAAACAACTGCTTTGGCGGCTAGAGAATGAAATCAGAGAAACAAAGGACTCCTT
GCGCAAGATTAACAAAAGCATTGATCAATACGATAAGTACACATATTTAAAAACCTCGTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P69890

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

71.429

91.304

0.652

Multiple sequence alignment