Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BLDA23_RS18275 Genome accession   NZ_CP031126
Coordinates   3449263..3449901 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus licheniformis strain 0DA23-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3444263..3454901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLDA23_RS18240 (BLDA23_18240) - 3445450..3445881 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  BLDA23_RS18245 (BLDA23_18245) - 3445881..3446222 (+) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  BLDA23_RS18250 (BLDA23_18250) - 3446215..3447693 (+) 1479 WP_003184838.1 Na+/H+ antiporter subunit D -
  BLDA23_RS18255 (BLDA23_18255) - 3447699..3448175 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  BLDA23_RS18260 (BLDA23_18260) - 3448175..3448459 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  BLDA23_RS18265 (BLDA23_18265) mnhG 3448443..3448817 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  BLDA23_RS18270 (BLDA23_18270) - 3448857..3449246 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  BLDA23_RS18275 (BLDA23_18275) comA 3449263..3449901 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  BLDA23_RS18280 (BLDA23_18280) comP 3449988..3452288 (-) 2301 WP_009329509.1 ATP-binding protein Regulator
  BLDA23_RS18285 (BLDA23_18285) comX 3452290..3452463 (-) 174 WP_009329510.1 competence pheromone ComX -
  BLDA23_RS18290 (BLDA23_18290) - 3452467..3453348 (-) 882 WP_009329511.1 polyprenyl synthetase family protein -
  BLDA23_RS18295 (BLDA23_18295) degQ 3453537..3453677 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  BLDA23_RS18305 (BLDA23_18305) - 3454163..3454510 (+) 348 WP_009329512.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=303560 BLDA23_RS18275 WP_003184849.1 3449263..3449901(-) (comA) [Bacillus licheniformis strain 0DA23-1]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=303560 BLDA23_RS18275 WP_003184849.1 3449263..3449901(-) (comA) [Bacillus licheniformis strain 0DA23-1]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment