Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BLDA23_RS13905 Genome accession   NZ_CP031126
Coordinates   2651218..2652018 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 0DA23-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2646218..2657018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLDA23_RS13870 (BLDA23_13870) - 2647410..2647664 (+) 255 WP_003183348.1 DUF2627 domain-containing protein -
  BLDA23_RS13875 (BLDA23_13875) - 2647715..2648440 (-) 726 WP_003183351.1 glycerophosphodiester phosphodiesterase -
  BLDA23_RS13880 (BLDA23_13880) - 2648574..2649149 (-) 576 WP_225315880.1 N-acetylmuramoyl-L-alanine amidase -
  BLDA23_RS13885 (BLDA23_13885) - 2649230..2649550 (-) 321 WP_003183355.1 hypothetical protein -
  BLDA23_RS23610 - 2649549..2649881 (+) 333 WP_229107141.1 hypothetical protein -
  BLDA23_RS13895 (BLDA23_13895) - 2650090..2650419 (-) 330 WP_080626942.1 serine acetyltransferase -
  BLDA23_RS13900 (BLDA23_13900) - 2650549..2650845 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  BLDA23_RS13905 (BLDA23_13905) spo0A 2651218..2652018 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  BLDA23_RS13910 (BLDA23_13910) spoIVB 2652308..2653591 (-) 1284 WP_011198109.1 SpoIVB peptidase -
  BLDA23_RS13915 (BLDA23_13915) recN 2653774..2655504 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  BLDA23_RS13920 (BLDA23_13920) argR 2655536..2655985 (-) 450 WP_003183369.1 transcriptional regulator ArgR -
  BLDA23_RS13925 (BLDA23_13925) - 2656151..2656996 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=303543 BLDA23_RS13905 WP_003183361.1 2651218..2652018(-) (spo0A) [Bacillus licheniformis strain 0DA23-1]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=303543 BLDA23_RS13905 WP_003183361.1 2651218..2652018(-) (spo0A) [Bacillus licheniformis strain 0DA23-1]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment