Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   DVA43_RS20680 Genome accession   NZ_CP031104
Coordinates   4219796..4221229 (-) Length   477 a.a.
NCBI ID   WP_103177192.1    Uniprot ID   -
Organism   Leclercia sp. W6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4214796..4226229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVA43_RS20650 (DVA43_20650) elbB 4216371..4217024 (+) 654 WP_103177196.1 isoprenoid biosynthesis glyoxalase ElbB -
  DVA43_RS20655 (DVA43_20655) mtgA 4217021..4217746 (+) 726 WP_114316581.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  DVA43_RS20660 (DVA43_20660) npr 4217743..4218015 (-) 273 WP_032614489.1 PTS phosphocarrier protein NPr -
  DVA43_RS20665 (DVA43_20665) rapZ 4218012..4218866 (-) 855 WP_032614487.1 RNase adapter RapZ -
  DVA43_RS20670 (DVA43_20670) ptsN 4218912..4219403 (-) 492 WP_103177194.1 PTS IIA-like nitrogen regulatory protein PtsN -
  DVA43_RS20675 (DVA43_20675) hpf 4219486..4219773 (-) 288 WP_103177193.1 ribosome hibernation promoting factor -
  DVA43_RS20680 (DVA43_20680) rpoN/rpoN1 4219796..4221229 (-) 1434 WP_103177192.1 RNA polymerase factor sigma-54 Machinery gene
  DVA43_RS20685 (DVA43_20685) lptB 4221277..4222002 (-) 726 WP_103177191.1 LPS export ABC transporter ATP-binding protein -
  DVA43_RS20690 (DVA43_20690) lptA 4222009..4222563 (-) 555 WP_103177190.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  DVA43_RS20695 (DVA43_20695) lptC 4222532..4223107 (-) 576 WP_103824936.1 LPS export ABC transporter periplasmic protein LptC -
  DVA43_RS20700 (DVA43_20700) kdsC 4223104..4223670 (-) 567 WP_114317179.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  DVA43_RS20705 (DVA43_20705) kdsD 4223685..4224671 (-) 987 WP_103177188.1 arabinose-5-phosphate isomerase KdsD -
  DVA43_RS20710 (DVA43_20710) - 4224685..4225662 (-) 978 WP_114316582.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54232.08 Da        Isoelectric Point: 4.3230

>NTDB_id=303389 DVA43_RS20680 WP_103177192.1 4219796..4221229(-) (rpoN/rpoN1) [Leclercia sp. W6]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEVETQQSQDNETLDTVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVSLDD
ILESIGDDEIELEEVEAVLKRVQRFDPIGVAARDLRDCLLIQLSQFVKETPWLEEARLIISEHLDLLANHDFRSLMRVTR
LKEEILKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGLWTVELNSDSIPRLQINQQYASMCTSSRNDSDNQFIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=303389 DVA43_RS20680 WP_103177192.1 4219796..4221229(-) (rpoN/rpoN1) [Leclercia sp. W6]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAGCTGGCAATGACGCCGCAGTTACAACAGGCTATTCGTCTGTTGCA
ACTGTCGACGCTGGAACTGCAGCAGGAGCTCCAGCAAGCGCTGGAAAGTAACCCCCTGCTCGAGCAAACCGATCTTCACG
ATGAGGTAGAAACGCAACAAAGCCAGGATAACGAGACCCTCGACACGGTTGATGCCCTTGAGCAAAAAGAGATGCCTGAC
GAGCTCCCTCTCGATGCCAGCTGGGATGAGATCTACACCGCCGGCACGCCATCCGGTACACGCGCAGACTACCAGGATGA
CGAGTTGCCGGTCTATCAGGGCGAGACCACCCAGTCACTGCAGGATTATCTGATGTGGCAGGTAGAGCTGACACCGTTCT
CCGATACCGATCGCGCCATCGCCACCTCCATTGTAGATGCCGTGGATGAGACCGGCTATCTGACCGTGTCGCTGGACGAT
ATTCTGGAGAGCATAGGCGATGACGAGATTGAGCTCGAAGAGGTCGAAGCGGTCCTGAAGCGCGTTCAGCGCTTTGACCC
GATTGGCGTCGCCGCGAGAGATCTCCGTGACTGCTTGCTCATTCAGCTTTCGCAGTTTGTTAAAGAGACCCCGTGGCTGG
AAGAGGCCCGGCTTATCATCAGCGAACATCTGGATCTGCTTGCCAACCACGATTTCCGCTCACTGATGCGCGTCACGCGG
CTGAAAGAGGAGATCCTGAAAGAGGCGGTCAACCTGATTCAGTCTCTGGATCCGCGCCCGGGGCAGTCTATCCAGACCAG
CGAGCCGGAGTATGTCATTCCCGATGTGCTGGTGCGCAAGCATAACGGTCTGTGGACCGTCGAGCTGAATTCCGACAGCA
TTCCCCGCCTGCAAATCAATCAGCAATACGCCTCAATGTGCACCAGCTCGCGCAACGACTCGGATAACCAGTTTATCCGC
AGTAATCTGCAGGAAGCCCGCTGGCTGATCAAAAGCCTTGAGAGCCGCAATGATACACTGCTGCGCGTCAGCCGCTGCAT
CGTCGAGCAGCAGCAGGCGTTTTTTGAGCAGGGTGAAGAGTTTATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAGTCGACCATTTCTCGCGTGACGACGCAGAAGTATCTGCACAGCCCGCGTGGTATTTTTGAGCTTAAG
TATTTTTTCTCCAGCCATGTCAACACCGAAGGCGGCGGCGAAGCCTCGTCGACAGCCATCCGGGCGCTGGTGAAAAAATT
GATCGCCGCGGAAAACCCCGCGAAACCGCTGAGTGACAGTAAGTTGACCACCATGCTGTCCGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAACTGGTCTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.525

100

0.491

Multiple sequence alignment