Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ETT47_RS08685 Genome accession   NZ_CP035452
Coordinates   1752871..1753977 (+) Length   368 a.a.
NCBI ID   WP_011185108.1    Uniprot ID   Q5X9A5
Organism   Streptococcus pyogenes strain emm123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747871..1758977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT47_RS08660 (ETT47_08650) hasB 1748519..1749727 (+) 1209 WP_032465325.1 UDP-glucose 6-dehydrogenase HasB -
  ETT47_RS08665 (ETT47_08660) hasC 1749908..1750822 (+) 915 WP_032465326.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  ETT47_RS08670 (ETT47_08665) - 1751160..1752293 (+) 1134 WP_137002476.1 ISAs1-like element IS1548 family transposase -
  ETT47_RS08680 (ETT47_08675) yaaA 1752456..1752869 (+) 414 WP_002991446.1 S4 domain-containing protein YaaA -
  ETT47_RS08685 (ETT47_08680) recF 1752871..1753977 (+) 1107 WP_011185108.1 DNA replication/repair protein RecF Machinery gene
  ETT47_RS08690 (ETT47_08685) - 1754033..1754896 (-) 864 WP_002992310.1 GRP family sugar transporter -
  ETT47_RS08695 (ETT47_08690) guaB 1755099..1756580 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  ETT47_RS08700 (ETT47_08695) trpS 1756888..1757910 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41795.71 Da        Isoelectric Point: 7.8294

>NTDB_id=303313 ETT47_RS08685 WP_011185108.1 1752871..1753977(+) (recF) [Streptococcus pyogenes strain emm123]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=303313 ETT47_RS08685 WP_011185108.1 1752871..1753977(+) (recF) [Streptococcus pyogenes strain emm123]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X9A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465