Detailed information NTG0303293

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: soil367_RS03670
• Genome accession: NZ_CP031093
• Coordinates: 806376..807725 (-)
• Length: 449 a.a.
• NCBI ID: WP_136547012.1
• Uniprot ID: A0A4V1D8G5
• Organism: Hydrocarboniclastica marina strain soil36-7
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 801376..812725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
soil367_RS03655 (soil367_03670)	-	804836..805132 (+)	297	WP_136547008.1	hypothetical protein	-
soil367_RS03660 (soil367_03675)	-	805212..805637 (+)	426	WP_281283911.1	type IV pilin protein	-
soil367_RS03665 (soil367_03680)	-	805710..806273 (-)	564	WP_136547010.1	GspH/FimT family pseudopilin	-
soil367_RS03670 (soil367_03685)	pilR	806376..807725 (-)	1350	WP_136547012.1	sigma-54 dependent transcriptional regulator	Regulator
soil367_RS03675 (soil367_03690)	-	807836..809491 (-)	1656	WP_136547014.1	ATP-binding protein	-
soil367_RS03680 (soil367_03695)	-	809548..810414 (-)	867	WP_246065504.1	outer membrane protein assembly factor BamD	-
soil367_RS03685 (soil367_03700)	rluD	810541..811515 (+)	975	WP_172962255.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
soil367_RS03690 (soil367_03705)	pgeF	811542..812279 (+)	738	WP_136550504.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49148.15 Da
• Isoelectric Point: 5.1659

>NTDB_id=303293 soil367_RS03670 WP_136547012.1 806376..807725(-) (pilR) [Hydrocarboniclastica marina strain soil36-7]
MTDATALVVDDEPDIRELLDITLTRMNIRCVTAANLKEARDLLAAQPFQLCLTDMNLPDGNGIDLVQWMQKAHPETPVAV
ITAYGSMDTAVLALKAGAFDFVSKPVELGRLRELVENALRLTTPASGAAASDNDSDGLLLGESLEINQLRKQVRKVARSQ
APVYISGESGSGKELVARMIHMQGPRRDGPFVPVNCGAIPSELMESEFFGHKKGSFTGATENKTGLFRAAQGGTLFLDEV
ADLPVSMQVKLLRAIQEKAVRAVGDHLEQAIDVRILSATHKDLPHLVKEGSFRQDLFYRINVIELKVPPLRAREDDIPLL
TRHILAKLAQDYESPQAQLSAAGLDKLKSYSFPGNVRELENILERAFTLCDGDIIDADDLQLAANEEGSGGHSTTPDGRI
DLENFLERIEREAIEKALEATGGNKTAAAKRLGISFRAMRYRLKKLGME

Nucleotide

• Length: 1350 bp

>NTDB_id=303293 soil367_RS03670 WP_136547012.1 806376..807725(-) (pilR) [Hydrocarboniclastica marina strain soil36-7]
ATGACTGACGCTACAGCACTGGTCGTCGATGACGAGCCCGATATCCGGGAGCTGCTCGACATCACCCTGACCCGAATGAA
TATCCGATGCGTAACCGCGGCCAATCTCAAGGAAGCCCGGGACCTGCTAGCAGCGCAGCCGTTTCAGCTCTGTCTGACAG
ACATGAATCTGCCCGATGGCAACGGCATCGATCTGGTGCAGTGGATGCAGAAAGCCCATCCGGAAACCCCCGTGGCCGTC
ATCACAGCGTATGGCAGCATGGACACAGCAGTGCTTGCGCTCAAGGCAGGTGCTTTTGACTTTGTCTCCAAGCCCGTAGA
GCTCGGGCGGTTGCGCGAATTGGTGGAAAACGCCCTACGGCTTACCACACCCGCAAGTGGCGCCGCAGCCAGTGATAACG
ACAGCGACGGGCTTCTCCTCGGCGAATCCCTTGAGATAAACCAGCTGCGCAAACAAGTAAGAAAGGTCGCTCGCAGCCAG
GCCCCGGTCTATATCAGCGGTGAGTCTGGCAGCGGCAAAGAGCTGGTCGCGCGCATGATCCATATGCAGGGCCCCCGACG
TGACGGCCCTTTCGTACCCGTCAACTGCGGCGCCATTCCTTCCGAACTCATGGAAAGCGAATTCTTCGGCCACAAAAAGG
GCAGTTTCACCGGCGCGACCGAGAACAAAACCGGCCTGTTCCGCGCAGCCCAGGGCGGCACCCTGTTCCTGGATGAAGTG
GCTGACCTGCCCGTATCGATGCAGGTTAAGCTGCTGCGGGCGATCCAGGAGAAAGCTGTGCGTGCGGTGGGCGATCACCT
GGAGCAGGCCATCGACGTGCGCATCCTCAGCGCCACGCACAAGGACCTGCCCCATCTGGTCAAGGAAGGCAGCTTCCGGC
AGGACCTCTTCTACCGCATCAACGTCATCGAACTCAAAGTCCCTCCGCTACGCGCGCGTGAAGACGACATTCCCCTGCTG
ACCCGGCATATCCTGGCCAAGCTCGCCCAGGACTACGAAAGCCCTCAGGCTCAGTTGAGCGCCGCCGGACTGGACAAGCT
AAAAAGCTACAGCTTTCCAGGCAATGTGCGGGAACTCGAGAACATACTGGAGCGCGCGTTCACACTCTGCGATGGGGACA
TTATAGACGCAGACGACCTGCAGCTTGCGGCCAACGAAGAGGGTAGCGGCGGACACTCGACAACGCCAGACGGCCGGATT
GACCTGGAAAACTTTCTCGAGCGGATCGAGCGGGAGGCCATTGAGAAGGCTTTGGAAGCCACTGGCGGCAACAAGACCGC
GGCGGCGAAGCGGCTGGGGATCAGTTTCCGGGCTATGCGGTACCGGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

• Bacterial regulatory protein, Fis family (HTH_8) (405-446)

3D structure

• AlphaFold DB: A0A4V1D8G5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.667	100	0.673
pilR	Acinetobacter baumannii strain A118	49.13	100	0.503