Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   soil367_RS03505 Genome accession   NZ_CP031093
Coordinates   772983..774359 (+) Length   458 a.a.
NCBI ID   WP_136546949.1    Uniprot ID   A0A4P7XG04
Organism   Hydrocarboniclastica marina strain soil36-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 767983..779359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  soil367_RS03495 (soil367_03510) - 770328..771746 (+) 1419 WP_136546943.1 FAD-dependent oxidoreductase -
  soil367_RS03500 (soil367_03515) hemE 771856..772920 (+) 1065 WP_136546946.1 uroporphyrinogen decarboxylase -
  soil367_RS03505 (soil367_03520) radA 772983..774359 (+) 1377 WP_136546949.1 DNA repair protein RadA Machinery gene
  soil367_RS03510 (soil367_03525) - 774411..774794 (-) 384 WP_136546951.1 PilZ domain-containing protein -
  soil367_RS03515 (soil367_03530) ettA 774892..776553 (-) 1662 WP_136546954.1 energy-dependent translational throttle protein EttA -
  soil367_RS03520 (soil367_03535) glyA 776938..778194 (+) 1257 WP_136546956.1 serine hydroxymethyltransferase -
  soil367_RS03525 (soil367_03540) nrdR 778285..778800 (+) 516 WP_136546958.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48677.98 Da        Isoelectric Point: 7.1212

>NTDB_id=303292 soil367_RS03505 WP_136546949.1 772983..774359(+) (radA) [Hydrocarboniclastica marina strain soil36-7]
MAKSKVAYVCSDCGSESAKWAGQCLSCKAWNTITEFRVGKASSAGASRREGYAGALSDVQQLDEIELSDSARMSTGIGEF
DRVLGGGLVPGSAVLIGGHPGAGKSTLLLQALCLLAERQSVLYVTGEESLQQVALRARRLGLPTAGVRMLSETNVERIVQ
IAEREKPGVLVVDSIQVMHIADVESAPGSVSQVRESAAFLTRYAKQTQTVLFLVGHVTKDGSLAGPKVLEHMIDCSVLLE
GTSDSRFRTLRGIKNRFGAVNELGVFAMLEQGLKEVKNPSAIFLNRASEAAPGSVVMVVWEGTRPLLVEVQALVDATQGG
YPRRVAVGMDQNRLAMLLAVLHRHGGLHCSDQDVFVNVVGGVKVAETSADLALLSAVVSSFRDRALPQDLIILGEVGLSG
EIRPVPNGLERIQEAAKHGFRRALVPKANAPKKAVEGMQVIPVSRLSEALDALADLSD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=303292 soil367_RS03505 WP_136546949.1 772983..774359(+) (radA) [Hydrocarboniclastica marina strain soil36-7]
ATGGCTAAATCAAAGGTGGCTTATGTCTGCAGTGACTGTGGTTCGGAATCAGCCAAATGGGCCGGGCAGTGCCTGAGCTG
TAAGGCCTGGAATACCATTACCGAGTTTCGTGTCGGCAAAGCCAGCAGTGCCGGCGCCAGCCGCCGGGAAGGCTACGCCG
GCGCTCTGTCCGATGTGCAGCAACTCGATGAGATTGAGCTCTCCGATTCGGCGCGAATGAGCACGGGCATCGGCGAGTTC
GACCGGGTCCTCGGCGGCGGGCTCGTACCGGGGTCTGCCGTCTTGATCGGCGGCCACCCGGGCGCCGGCAAAAGTACATT
GTTACTGCAGGCCCTGTGTCTGCTGGCCGAGCGGCAATCTGTTCTCTACGTGACCGGCGAGGAGTCCCTGCAACAGGTGG
CTTTGCGGGCTCGTCGCCTGGGCCTGCCGACCGCTGGCGTTCGCATGCTCTCGGAAACCAATGTCGAGCGGATCGTCCAG
ATTGCGGAACGCGAAAAACCCGGCGTGCTGGTGGTGGACAGTATCCAGGTGATGCACATTGCCGATGTGGAGTCGGCCCC
CGGAAGCGTTTCCCAGGTGCGGGAAAGCGCCGCGTTCCTCACCCGTTATGCGAAGCAGACCCAAACCGTCCTGTTTCTGG
TTGGACATGTGACCAAAGATGGGTCTCTGGCCGGCCCCAAAGTGCTTGAACACATGATCGATTGTTCCGTGCTGTTGGAA
GGCACCAGCGATAGCCGTTTTCGTACGCTGCGAGGTATAAAGAACCGTTTTGGCGCAGTCAATGAGCTTGGTGTTTTCGC
AATGCTCGAGCAGGGTCTGAAAGAGGTCAAGAACCCCAGCGCCATATTCCTGAACCGGGCCAGCGAAGCGGCGCCGGGCA
GCGTTGTGATGGTCGTATGGGAGGGCACTCGCCCCCTGTTGGTCGAGGTGCAGGCTCTGGTGGACGCCACCCAGGGCGGT
TATCCCAGGCGGGTTGCTGTTGGAATGGACCAGAATCGGTTGGCCATGCTGCTGGCGGTACTGCACCGGCACGGCGGCCT
GCACTGCAGTGATCAGGATGTGTTCGTCAACGTTGTCGGCGGGGTCAAAGTAGCCGAGACCAGTGCAGACCTGGCTTTGC
TCTCGGCCGTGGTCTCCTCGTTCCGGGACCGGGCATTGCCCCAGGACCTGATCATATTGGGCGAGGTGGGCCTCAGTGGT
GAAATTCGGCCAGTGCCCAATGGGCTGGAGCGCATCCAGGAAGCCGCCAAGCATGGCTTCCGTCGGGCACTCGTACCCAA
GGCTAATGCGCCGAAGAAAGCTGTTGAGGGTATGCAGGTGATCCCGGTGAGTCGCTTGAGCGAAGCTTTGGACGCACTGG
CTGATCTGTCAGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(84-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7XG04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.913

100

0.491
  radA Streptococcus mitis NCTC 12261

44.396

99.345

0.441
  radA Streptococcus pneumoniae Rx1

44.298

99.563

0.441
  radA Streptococcus pneumoniae D39

44.298

99.563

0.441
  radA Streptococcus pneumoniae R6

44.298

99.563

0.441
  radA Streptococcus pneumoniae TIGR4

44.298

99.563

0.441
  radA Streptococcus mitis SK321

44.176

99.345

0.439

Multiple sequence alignment