Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   DN407_RS20650 Genome accession   NZ_CP031068
Coordinates   3995152..3995946 (-) Length   264 a.a.
NCBI ID   WP_021727703.1    Uniprot ID   A0A9X3FF97
Organism   Bacillus sp. JAS24-2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3990152..4000946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN407_RS20625 (DN407_20660) - 3990678..3992750 (-) 2073 WP_000810974.1 sigma-54-dependent Fis family transcriptional regulator -
  DN407_RS20630 (DN407_20665) - 3992888..3993121 (+) 234 WP_001190210.1 DUF2627 domain-containing protein -
  DN407_RS20635 (DN407_20670) - 3993171..3993899 (-) 729 WP_000172580.1 glycerophosphodiester phosphodiesterase -
  DN407_RS20640 (DN407_20675) - 3993950..3994096 (+) 147 WP_001247671.1 YycC family protein -
  DN407_RS20645 (DN407_20680) - 3994336..3994899 (-) 564 WP_000428232.1 PRK06770 family protein -
  DN407_RS20650 (DN407_20685) spo0A 3995152..3995946 (-) 795 WP_021727703.1 sporulation transcription factor Spo0A Regulator
  DN407_RS20660 (DN407_20695) spoIVB 3996237..3997535 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  DN407_RS20665 (DN407_20700) recN 3997654..3999393 (-) 1740 WP_000947765.1 DNA repair protein RecN Machinery gene
  DN407_RS20670 (DN407_20705) argR 3999658..4000107 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29445.20 Da        Isoelectric Point: 7.1175

>NTDB_id=303170 DN407_RS20650 WP_021727703.1 3995152..3995946(-) (spo0A) [Bacillus sp. JAS24-2]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANTMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=303170 DN407_RS20650 WP_021727703.1 3995152..3995946(-) (spo0A) [Bacillus sp. JAS24-2]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAGAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTTGGCCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACACTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCCACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment