Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VCM66_RS03470 Genome accession   NC_012578
Coordinates   714420..715145 (-) Length   241 a.a.
NCBI ID   WP_000877198.1    Uniprot ID   Q9KU21
Organism   Vibrio cholerae M66-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 709420..720145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCM66_RS03455 (VCM66_0662) - 711055..712095 (-) 1041 WP_000595738.1 PotD/PotF family extracellular solute-binding protein -
  VCM66_RS03460 (VCM66_0663) pheA 712277..713452 (-) 1176 WP_000130282.1 prephenate dehydratase -
  VCM66_RS03465 (VCM66_0664) raiA 713692..714018 (-) 327 WP_000700176.1 ribosome-associated translation inhibitor RaiA -
  VCM66_RS03470 (VCM66_0666) comL 714420..715145 (-) 726 WP_000877198.1 outer membrane protein assembly factor BamD Machinery gene
  VCM66_RS03475 (VCM66_0667) rluD 715300..716274 (+) 975 WP_000941107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VCM66_RS03480 (VCM66_0668) pgeF 716277..716999 (+) 723 WP_000602844.1 peptidoglycan editing factor PgeF -
  VCM66_RS03485 (VCM66_0669) clpC 717124..719697 (+) 2574 WP_001235051.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27875.68 Da        Isoelectric Point: 5.1660

>NTDB_id=30315 VCM66_RS03470 WP_000877198.1 714420..715145(-) (comL) [Vibrio cholerae M66-2]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=30315 VCM66_RS03470 WP_000877198.1 714420..715145(-) (comL) [Vibrio cholerae M66-2]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KU21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378