Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VCM66_RS01070 Genome accession   NC_012578
Coordinates   211250..211924 (+) Length   224 a.a.
NCBI ID   WP_000053959.1    Uniprot ID   Q9KVC9
Organism   Vibrio cholerae M66-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 206250..216924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCM66_RS01050 (VCM66_0201) - 206375..207322 (-) 948 WP_000076197.1 Kdo(2)-lipid IV(A) acyltransferase -
  VCM66_RS01055 (VCM66_0202) slmA 207328..207918 (-) 591 WP_000918350.1 nucleoid occlusion factor SlmA -
  VCM66_RS18330 - 207874..208011 (+) 138 WP_001889830.1 hypothetical protein -
  VCM66_RS01060 (VCM66_0203) coaBC 208077..209276 (-) 1200 WP_001190972.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  VCM66_RS01065 (VCM66_0204) - 209459..211138 (+) 1680 WP_000953041.1 methyl-accepting chemotaxis protein -
  VCM66_RS01070 (VCM66_0205) radC 211250..211924 (+) 675 WP_000053959.1 DNA repair protein RadC Machinery gene
  VCM66_RS01075 (VCM66_0206) rpmB 212219..212455 (+) 237 WP_000091952.1 50S ribosomal protein L28 -
  VCM66_RS01080 (VCM66_0207) rpmG 212469..212636 (+) 168 WP_001051801.1 50S ribosomal protein L33 -
  VCM66_RS01085 (VCM66_0208) - 212863..213345 (+) 483 WP_001266257.1 hypothetical protein -
  VCM66_RS01090 (VCM66_0209) mutM 213355..214164 (+) 810 WP_001114647.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  VCM66_RS01095 (VCM66_0210) coaD 214261..214755 (-) 495 WP_000078888.1 pantetheine-phosphate adenylyltransferase -
  VCM66_RS01100 (VCM66_0211) - 214866..215903 (+) 1038 WP_000735619.1 glycosyltransferase family 9 protein -
  VCM66_RS01105 (VCM66_0212) - 215965..216744 (-) 780 WP_000042983.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25246.07 Da        Isoelectric Point: 7.9636

>NTDB_id=30297 VCM66_RS01070 WP_000053959.1 211250..211924(+) (radC) [Vibrio cholerae M66-2]
MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=30297 VCM66_RS01070 WP_000053959.1 211250..211924(+) (radC) [Vibrio cholerae M66-2]
ATGAGCCTAAAACAGTTACCCACCGAATCCATGCCGCGCGAAAAATTGCTGCAACGCGGTCCACAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACCCAAGGCATGAACGTGCTCGCCTTAGCTGATCTGCTGCTGCGCGATT
TTGGATCGCTGCGCGCACTGTTTTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTT
CAATTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA
GCAAACCAAACTTTATTTATCGAGCGTGCTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG
GCGCTGCACCATAATGCCGCTGCGGTAATACTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGTGGCTGGATATAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-79)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KVC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.704

96.429

0.518
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.379

Multiple sequence alignment