Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   DUN60_RS11780 Genome accession   NZ_CP031055
Coordinates   2692002..2692982 (-) Length   326 a.a.
NCBI ID   WP_004735404.1    Uniprot ID   A0A7W4C9S7
Organism   Vibrio splendidus strain Vibrio sp     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2687002..2697982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS11765 recA 2687499..2688539 (-) 1041 WP_004735435.1 recombinase RecA Machinery gene
  DUN60_RS11770 pncC 2688678..2689172 (-) 495 WP_114634004.1 nicotinamide-nucleotide amidase -
  DUN60_RS11775 mutS 2689296..2691857 (+) 2562 WP_114634005.1 DNA mismatch repair protein MutS -
  DUN60_RS11780 rpoS 2692002..2692982 (-) 981 WP_004735404.1 RNA polymerase sigma factor RpoS Regulator
  DUN60_RS11785 nlpD 2693081..2693995 (-) 915 WP_114634006.1 murein hydrolase activator NlpD -
  DUN60_RS11790 - 2694030..2694656 (-) 627 WP_004735402.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  DUN60_RS11795 surE 2694657..2695400 (-) 744 WP_102436062.1 5'/3'-nucleotidase SurE -
  DUN60_RS11800 truD 2695478..2696524 (-) 1047 WP_114634007.1 tRNA pseudouridine(13) synthase TruD -
  DUN60_RS11805 ispF 2696547..2697026 (-) 480 WP_004735397.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  DUN60_RS11810 ispD 2697029..2697730 (-) 702 WP_114634008.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37244.51 Da        Isoelectric Point: 5.4366

>NTDB_id=302969 DUN60_RS11780 WP_004735404.1 2692002..2692982(-) (rpoS) [Vibrio splendidus strain Vibrio sp]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=302969 DUN60_RS11780 WP_004735404.1 2692002..2692982(-) (rpoS) [Vibrio splendidus strain Vibrio sp]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAGCTTT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTAGTGGTAAAAATTTCACGTCGTTATAGTAACCGTGGTCT
TGCACTTCTTGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAATTTGACCCAGAACGTGGTTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTAATGAATCAGACTCGCACTATCCGTTTA
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTGCGTACCGCAAGAGAGCTATCACAAAAACTTGACCATGAACCAAC
GGCGGAAGAAATTGCTTCTAAGCTAGATAAGCCTGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTGGGTTACGAACCGTCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGCCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAATCTG
TTCAATGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4C9S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.416

100

0.847

Multiple sequence alignment