Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   DUN60_RS11545 Genome accession   NZ_CP031055
Coordinates   2647257..2647862 (+) Length   201 a.a.
NCBI ID   WP_017079965.1    Uniprot ID   A0A1R3EZ21
Organism   Vibrio splendidus strain Vibrio sp     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2642257..2652862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS11525 - 2642478..2643395 (-) 918 WP_054547493.1 ABC transporter ATP-binding protein -
  DUN60_RS11530 - 2643716..2645347 (-) 1632 WP_029222729.1 SulP family inorganic anion transporter -
  DUN60_RS11535 can 2645635..2646294 (+) 660 WP_004735453.1 carbonate dehydratase -
  DUN60_RS11540 hpt 2646389..2646919 (-) 531 WP_004735452.1 hypoxanthine phosphoribosyltransferase -
  DUN60_RS11545 opaR 2647257..2647862 (+) 606 WP_017079965.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  DUN60_RS11550 lpdA 2648056..2649483 (-) 1428 WP_004735450.1 dihydrolipoyl dehydrogenase -
  DUN60_RS11555 aceF 2649726..2651603 (-) 1878 WP_114633997.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23217.47 Da        Isoelectric Point: 6.4040

>NTDB_id=302961 DUN60_RS11545 WP_017079965.1 2647257..2647862(+) (opaR) [Vibrio splendidus strain Vibrio sp]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAHDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=302961 DUN60_RS11545 WP_017079965.1 2647257..2647862(+) (opaR) [Vibrio splendidus strain Vibrio sp]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
AGTATTCTCTCGCCGCGGTATTGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTAGCAACGGTAT
TTAATTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCACGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCTCTATTCGTAACCACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGTAAAGCGATCGAACGCGGCGAAGTTTGCGACGATCACGACCCTAAA
CATCTAGCGAACCTATTCCACGGCATTTGCTACTCACTGTTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGTTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EZ21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82

99.502

0.816
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment