Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   DUN60_RS09340 Genome accession   NZ_CP031055
Coordinates   2144698..2146086 (-) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio splendidus strain Vibrio sp     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139698..2151086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS09305 moaE 2140212..2140685 (-) 474 WP_004734024.1 molybdopterin synthase catalytic subunit MoaE -
  DUN60_RS09310 moaD 2140688..2140933 (-) 246 WP_017107315.1 molybdopterin synthase sulfur carrier subunit -
  DUN60_RS09315 moaC 2140930..2141409 (-) 480 WP_114633820.1 cyclic pyranopterin monophosphate synthase MoaC -
  DUN60_RS09320 moaB 2141422..2141934 (-) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  DUN60_RS09325 moaA 2142026..2143015 (-) 990 WP_114633821.1 GTP 3',8-cyclase MoaA -
  DUN60_RS09330 - 2143351..2144238 (+) 888 WP_017063463.1 YvcK family protein -
  DUN60_RS09335 luxU 2144329..2144673 (-) 345 WP_017063462.1 quorum-sensing phosphorelay protein LuxU -
  DUN60_RS09340 luxO 2144698..2146086 (-) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  DUN60_RS09345 uvrB 2146388..2148418 (-) 2031 WP_102445087.1 excinuclease ABC subunit UvrB -
  DUN60_RS09355 rsxA 2149370..2149948 (+) 579 WP_004734039.1 electron transport complex subunit RsxA -
  DUN60_RS09360 rsxB 2149951..2150544 (+) 594 WP_004734040.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=302959 DUN60_RS09340 WP_004734031.1 2144698..2146086(-) (luxO) [Vibrio splendidus strain Vibrio sp]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=302959 DUN60_RS09340 WP_004734031.1 2144698..2146086(-) (luxO) [Vibrio splendidus strain Vibrio sp]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAGTAC
CCTGAAGTTCCGGTTATCTTCATGACGGCTCACGGCTCTATCGATACCGCCGTAGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAGCTTAAAA
ACAGCTCGGAACACCCGGGAAACCAAAATTACCAAGGCTTTATCGGCAGCAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGACTCTGCCGCATCGAGCAAAGCCAGTATTTTCATCACGGGTGAGAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
TATTCATGCGGCGAGCAAGCGTGGTGACAAGCCTTTCATCGCAATTAACTGTGCGGCTATCCCTAAAGATCTGATTGAAA
GTGAGCTGTTTGGTCACGTTAAAGGCGCCTTTACCGGTGCTGCAACTGATCGTCAAGGTGCCGCTGAACTCGCTGATGGC
GGAACACTGTTCCTTGATGAATTGTGCGAGATGGACTTAGAGCTGCAAACTAAGCTGCTGCGCTTTATCCAAACCGGTAC
TTTTCAAAAAGTTGGCTCTTCGAAGATGAAGAGTGTCGATGTTCGTTTCGTATGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCATTGCACCTGCCGCCATTGCGCGAG
CGCGGTGAAGATGTCATCGAGATTGCGTACTCGTTACTAGGCTACATGTCGGTTGAGGAAGGTAAGGCGTTTGTGCGTTT
TGCTCAGGAAGTGCTTGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTATTACGGAACG
TGGTGGTATTGAATAACGGCAAAGAGATTACTCTCAACATGCTTCCACCACCATTGAACCAACCGATTGAAAACAGCCTG
CGCTTGAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAGACGGCTATCGA
ACAGGCCATAAAAGCGTGTGACGGCAACATTCCCCGCGCGGCCGGTTTCTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment