Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   DT536_RS14260 Genome accession   NZ_CP031011
Coordinates   2915141..2915542 (-) Length   133 a.a.
NCBI ID   WP_058869736.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2910141..2920542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS14230 (DT536_14230) tadA 2910397..2910897 (-) 501 WP_004984825.1 tRNA adenosine(34) deaminase TadA -
  DT536_RS14235 (DT536_14235) - 2910903..2912024 (-) 1122 WP_058869733.1 enoyl-CoA hydratase/isomerase family protein -
  DT536_RS14240 (DT536_14240) ung 2912021..2912734 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  DT536_RS14245 (DT536_14245) - 2912776..2913372 (-) 597 WP_004696854.1 6-pyruvoyl trahydropterin synthase family protein -
  DT536_RS14250 (DT536_14250) gspK 2913495..2914445 (-) 951 WP_058869734.1 type II secretion system minor pseudopilin GspK -
  DT536_RS14255 (DT536_14255) xcpW 2914524..2915144 (-) 621 WP_058869735.1 type II secretion system minor pseudopilin GspJ Machinery gene
  DT536_RS14260 (DT536_14260) xcpV 2915141..2915542 (-) 402 WP_058869736.1 type II secretion system minor pseudopilin GspI Machinery gene
  DT536_RS14265 (DT536_14265) - 2915577..2916146 (-) 570 WP_058869737.1 type II secretion system protein -
  DT536_RS14270 (DT536_14270) - 2916159..2916773 (-) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  DT536_RS14275 (DT536_14275) - 2916819..2917592 (-) 774 WP_114392961.1 TatD family hydrolase -
  DT536_RS14280 (DT536_14280) - 2917619..2917960 (-) 342 WP_058869739.1 PilZ domain-containing protein -
  DT536_RS14285 (DT536_14285) - 2917975..2918958 (-) 984 WP_058869740.1 DNA polymerase III subunit delta' -
  DT536_RS14290 (DT536_14290) kdsB 2918978..2919739 (-) 762 WP_058869741.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14645.73 Da        Isoelectric Point: 9.6943

>NTDB_id=302854 DT536_RS14260 WP_058869736.1 2915141..2915542(-) (xcpV) [Acinetobacter johnsonii strain LXL_C1]
MKHYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=302854 DT536_RS14260 WP_058869736.1 2915141..2915542(-) (xcpV) [Acinetobacter johnsonii strain LXL_C1]
ATGAAACATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTGGAAGTGATGGTGGCACTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCTATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(48-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

75.214

87.97

0.662

Multiple sequence alignment