Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   DT536_RS14255 Genome accession   NZ_CP031011
Coordinates   2914524..2915144 (-) Length   206 a.a.
NCBI ID   WP_058869735.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2909524..2920144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS14225 (DT536_14225) - 2909890..2910321 (-) 432 WP_004696860.1 SRPBCC family protein -
  DT536_RS14230 (DT536_14230) tadA 2910397..2910897 (-) 501 WP_004984825.1 tRNA adenosine(34) deaminase TadA -
  DT536_RS14235 (DT536_14235) - 2910903..2912024 (-) 1122 WP_058869733.1 enoyl-CoA hydratase/isomerase family protein -
  DT536_RS14240 (DT536_14240) ung 2912021..2912734 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  DT536_RS14245 (DT536_14245) - 2912776..2913372 (-) 597 WP_004696854.1 6-pyruvoyl trahydropterin synthase family protein -
  DT536_RS14250 (DT536_14250) gspK 2913495..2914445 (-) 951 WP_058869734.1 type II secretion system minor pseudopilin GspK -
  DT536_RS14255 (DT536_14255) xcpW 2914524..2915144 (-) 621 WP_058869735.1 type II secretion system minor pseudopilin GspJ Machinery gene
  DT536_RS14260 (DT536_14260) xcpV 2915141..2915542 (-) 402 WP_058869736.1 type II secretion system minor pseudopilin GspI Machinery gene
  DT536_RS14265 (DT536_14265) - 2915577..2916146 (-) 570 WP_058869737.1 type II secretion system protein -
  DT536_RS14270 (DT536_14270) - 2916159..2916773 (-) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  DT536_RS14275 (DT536_14275) - 2916819..2917592 (-) 774 WP_114392961.1 TatD family hydrolase -
  DT536_RS14280 (DT536_14280) - 2917619..2917960 (-) 342 WP_058869739.1 PilZ domain-containing protein -
  DT536_RS14285 (DT536_14285) - 2917975..2918958 (-) 984 WP_058869740.1 DNA polymerase III subunit delta' -
  DT536_RS14290 (DT536_14290) kdsB 2918978..2919739 (-) 762 WP_058869741.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23594.12 Da        Isoelectric Point: 5.0657

>NTDB_id=302853 DT536_RS14255 WP_058869735.1 2914524..2915144(-) (xcpW) [Acinetobacter johnsonii strain LXL_C1]
MTKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQVQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMAQWP
EVTLSENDVTQAKILPRGLKINLTVDEVSYEWVFSLLNTDFLKQKN

Nucleotide


Download         Length: 621 bp        

>NTDB_id=302853 DT536_RS14255 WP_058869735.1 2914524..2915144(-) (xcpW) [Acinetobacter johnsonii strain LXL_C1]
ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG
GAAGGTTTTTGATTATCTGATCAAGATTAAAGAACGTAATACCCAACATGAACAGCGCTTAGGTCAGCTACAAGAAGCAT
ATCAACAAGTGTTACGTGACACGGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTAACCTTTAGTAAAACTGGCGTGACTGATCCTTTGATGCAAGGCATACCGCCTGAAGAGCGAGT
TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACCGGTAATGATCAAC
CTGAAACCAGTGTTTTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAATCCCAATGAAATGGCGCAATGGCCT
GAGGTGACATTGAGTGAAAATGATGTAACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACTGTCGATGA
AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.706

97.573

0.573

Multiple sequence alignment