Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DT536_RS06905 Genome accession   NZ_CP031011
Coordinates   1436769..1437416 (-) Length   215 a.a.
NCBI ID   WP_058870363.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431769..1442416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS06870 (DT536_06870) mlaE 1432111..1432890 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  DT536_RS06875 (DT536_06875) - 1432890..1433564 (+) 675 WP_010327614.1 outer membrane lipid asymmetry maintenance protein MlaD -
  DT536_RS06880 (DT536_06880) - 1433585..1434220 (+) 636 WP_004691364.1 phospholipid-binding protein MlaC -
  DT536_RS06885 (DT536_06885) - 1434232..1434519 (+) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  DT536_RS06890 (DT536_06890) - 1434602..1435615 (-) 1014 WP_058870366.1 CorA family divalent cation transporter -
  DT536_RS06895 (DT536_06895) - 1435768..1436367 (+) 600 WP_058870365.1 TIGR00730 family Rossman fold protein -
  DT536_RS06900 (DT536_06900) - 1436364..1436768 (+) 405 WP_058870364.1 NUDIX hydrolase -
  DT536_RS06905 (DT536_06905) comF 1436769..1437416 (-) 648 WP_058870363.1 ComF family protein Machinery gene
  DT536_RS06910 (DT536_06910) recG 1437403..1439448 (-) 2046 WP_058870362.1 ATP-dependent DNA helicase RecG -
  DT536_RS06915 (DT536_06915) - 1439482..1440297 (+) 816 WP_058870361.1 NAD-dependent epimerase/dehydratase family protein -
  DT536_RS06920 (DT536_06920) - 1440526..1441050 (+) 525 WP_131772999.1 hypothetical protein -
  DT536_RS06925 (DT536_06925) - 1441161..1442093 (-) 933 WP_114392660.1 IS5 family transposase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24910.14 Da        Isoelectric Point: 9.6092

>NTDB_id=302843 DT536_RS06905 WP_058870363.1 1436769..1437416(-) (comF) [Acinetobacter johnsonii strain LXL_C1]
MPMFSHLLHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTVEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGIIQQIRLPKIQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=302843 DT536_RS06905 WP_058870363.1 1436769..1437416(-) (comF) [Acinetobacter johnsonii strain LXL_C1]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTGCTACACAAAGCACAGCCTTGTCAGTTGTGTGGCATTGT
CCGCGCAGATCTGCATTCGGTCTGTCTGGACTGCTGGCAACAACTCCCACTACATCCACAGACCGTTGAAAAACAAGAAC
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCACCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTATTCAGCAAATTCGCTTACCTAAAATACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCAGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGCAAAACGCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.701

90.233

0.512
  comF Acinetobacter baumannii D1279779

56.701

90.233

0.512

Multiple sequence alignment