Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DT536_RS06140 Genome accession   NZ_CP031011
Coordinates   1283228..1283782 (+) Length   184 a.a.
NCBI ID   WP_081313273.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1278228..1288782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS06115 (DT536_06115) - 1279837..1280736 (+) 900 WP_004733183.1 cation diffusion facilitator family transporter -
  DT536_RS06120 (DT536_06120) - 1280894..1281598 (+) 705 WP_001067784.1 IS6-like element IS1006 family transposase -
  DT536_RS06125 (DT536_06125) - 1281646..1282158 (+) 513 WP_201784311.1 M48 family metallopeptidase -
  DT536_RS06130 (DT536_06130) - 1282204..1282422 (-) 219 WP_005180668.1 helix-turn-helix domain-containing protein -
  DT536_RS06135 (DT536_06135) - 1282497..1282979 (+) 483 WP_058870464.1 hypothetical protein -
  DT536_RS06140 (DT536_06140) ssb 1283228..1283782 (+) 555 WP_081313273.1 single-stranded DNA-binding protein Machinery gene
  DT536_RS06145 (DT536_06145) - 1283991..1285409 (-) 1419 WP_058870462.1 aspartate ammonia-lyase -
  DT536_RS06150 (DT536_06150) - 1285544..1286434 (+) 891 WP_058870461.1 LysR substrate-binding domain-containing protein -
  DT536_RS06155 (DT536_06155) - 1286571..1287869 (-) 1299 WP_058870460.1 dicarboxylate/amino acid:cation symporter -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20706.51 Da        Isoelectric Point: 8.3350

>NTDB_id=302834 DT536_RS06140 WP_081313273.1 1283228..1283782(+) (ssb) [Acinetobacter johnsonii strain LXL_C1]
MDTATYSKTNMSNVIVVGTLGKDPETKTFPNGGSLTQFSMATSESWTDKSTGEKKEQTEWHRIVLSNRLGEIAQQYLRKG
SKVYIEGSLRTRQWTDQNGQERYTTEIRGEQMQMLDSPRAENQSNYNQGGYNQNQQGFNQNQGGFGGKNTQGFNQNSKPN
NGQKPPQNQNIPNKNNDLGDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=302834 DT536_RS06140 WP_081313273.1 1283228..1283782(+) (ssb) [Acinetobacter johnsonii strain LXL_C1]
ATGGATACTGCAACTTATAGTAAAACTAATATGAGCAATGTTATTGTTGTAGGAACACTAGGTAAAGACCCTGAAACAAA
AACCTTTCCAAATGGCGGTTCATTAACTCAGTTTTCAATGGCAACGAGTGAATCGTGGACAGATAAAAGTACGGGTGAAA
AGAAAGAACAAACAGAATGGCACAGAATTGTGCTTAGTAATCGATTAGGTGAAATAGCACAACAATACTTAAGAAAAGGC
TCTAAAGTCTACATTGAAGGTTCATTAAGGACTAGACAGTGGACGGATCAAAATGGTCAGGAAAGATATACCACAGAAAT
TCGTGGCGAGCAGATGCAGATGTTAGATAGTCCAAGAGCGGAAAATCAATCTAATTATAATCAAGGTGGTTATAACCAAA
ATCAACAAGGTTTTAATCAAAATCAAGGCGGTTTTGGTGGTAAAAATACTCAAGGGTTTAATCAGAACAGTAAACCTAAT
AATGGGCAAAAACCACCACAGAATCAAAATATTCCCAATAAAAACAACGATTTAGGAGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(11-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.955

97.283

0.505
  ssb Vibrio cholerae strain A1552

44.751

98.37

0.44

Multiple sequence alignment