Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DT536_RS03600 Genome accession   NZ_CP031011
Coordinates   748704..750272 (+) Length   522 a.a.
NCBI ID   WP_058868729.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 743704..755272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS03580 (DT536_03580) - 744180..745484 (+) 1305 WP_010325700.1 homoserine dehydrogenase -
  DT536_RS03585 (DT536_03585) thrC 745550..746689 (+) 1140 WP_058868731.1 threonine synthase -
  DT536_RS03590 (DT536_03590) - 746776..747831 (-) 1056 WP_131772994.1 serine hydrolase -
  DT536_RS03595 (DT536_03595) - 748047..748682 (+) 636 WP_004692836.1 response regulator -
  DT536_RS03600 (DT536_03600) pilS 748704..750272 (+) 1569 WP_058868729.1 sensor histidine kinase Regulator
  DT536_RS03605 (DT536_03605) pilR 750345..751709 (+) 1365 WP_406564419.1 sigma-54-dependent transcriptional regulator Regulator
  DT536_RS03610 (DT536_03610) - 751714..752889 (-) 1176 WP_058868727.1 S41 family peptidase -
  DT536_RS03615 (DT536_03615) gpmI 752908..754455 (-) 1548 WP_058868726.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59572.07 Da        Isoelectric Point: 6.4937

>NTDB_id=302826 DT536_RS03600 WP_058868729.1 748704..750272(+) (pilS) [Acinetobacter johnsonii strain LXL_C1]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAHDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNDPEQALLQNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIHIRVYSYKNLVHIDVCDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=302826 DT536_RS03600 WP_058868729.1 748704..750272(+) (pilS) [Acinetobacter johnsonii strain LXL_C1]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTTTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
TTGCTGTTTGTTGTTGGTTTATCTACTGACTTATGAGCAGCTATTTTCAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTAATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATCGTCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCATTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTTCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCAGCCTGTGCATTATTGGGTATCTCCCCGATTTATGCTCACGATAAA
TATCCTTTGTACAAAGCACAGCCTGATTTATTTGAACTCCTCAAATTCGACCAACTGAAGAATGGAGAAAAATTCCAATT
TACATCCCAGCTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAACCAAACACTGACCTTATTCG
TCCTACAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGTATT
GCCCATGAAATCCGCAATCCATTGGCTGCCATCACCCAAGCCAATGAATTGATGCAGGTGAACGATCCTGAGCAAGCCCT
GTTACAGAACATGATCGCCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCAACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCAGCTGAAGCCGAGCACATTCACATTCGAGTCTATAGCTATAAAAACCTCGTCCACATTG
ATGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.077

99.808

0.6

Multiple sequence alignment