Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   DT351_RS01055 Genome accession   NZ_CP031003
Coordinates   197816..198523 (-) Length   235 a.a.
NCBI ID   WP_081394487.1    Uniprot ID   A0A385ABK3
Organism   Latilactobacillus curvatus strain TMW 1.1928     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 192816..203523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT351_RS01050 (DT351_01050) rpoC 194102..197743 (+) 3642 WP_076786309.1 DNA-directed RNA polymerase subunit beta' -
  DT351_RS01055 (DT351_01055) comC 197816..198523 (-) 708 WP_081394487.1 A24 family peptidase Machinery gene
  DT351_RS01060 (DT351_01060) rpsL 198794..199207 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  DT351_RS01065 (DT351_01065) rpsG 199297..199767 (+) 471 WP_076786307.1 30S ribosomal protein S7 -
  DT351_RS01070 (DT351_01070) fusA 199859..201946 (+) 2088 WP_004270213.1 elongation factor G -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26588.96 Da        Isoelectric Point: 6.9090

>NTDB_id=302764 DT351_RS01055 WP_081394487.1 197816..198523(-) (comC) [Latilactobacillus curvatus strain TMW 1.1928]
MTRLLIYFLTFVIGACCASFLTVCAWRWPLGLSITWPGSRCDFCHHALAWYDLCPIISYLILRGHCRYCDTRIQHHFFTS
EVIGGLLACCLASQYFTPQIGYLLLILYLLSLVDIFHTALYPVPMVLAFMPLFIDYWPTNHWLSALLIGCTLSVINYFSD
GIGTGDIELLAILGLWFGLEVTLSMLLIACLLCLIKYLIDSLRHPVVLALVGHRPIPFVPYISYGVLIVLFIVNT

Nucleotide


Download         Length: 708 bp        

>NTDB_id=302764 DT351_RS01055 WP_081394487.1 197816..198523(-) (comC) [Latilactobacillus curvatus strain TMW 1.1928]
ATGACACGTTTGTTAATATATTTTTTAACCTTTGTTATTGGCGCGTGTTGCGCCTCTTTTTTAACTGTTTGCGCTTGGCG
TTGGCCACTCGGTTTATCCATCACATGGCCTGGTTCACGGTGCGACTTCTGCCATCACGCCCTCGCTTGGTACGACTTAT
GTCCAATTATCAGTTACCTCATTCTCAGAGGTCACTGCCGCTATTGTGATACTCGAATCCAGCACCATTTTTTTACTAGT
GAGGTTATTGGCGGCTTGTTAGCGTGTTGCTTAGCCAGTCAATATTTCACACCACAGATTGGCTATTTATTGCTTATCCT
TTACTTGTTGAGCCTAGTCGATATTTTCCATACAGCTCTATACCCAGTTCCTATGGTACTGGCTTTTATGCCTTTGTTTA
TTGACTACTGGCCGACAAACCATTGGCTCAGTGCCCTATTGATTGGCTGCACCTTATCTGTCATCAACTACTTTTCAGAT
GGCATCGGTACTGGTGACATTGAATTATTGGCAATTCTTGGGTTGTGGTTTGGATTGGAGGTCACCCTATCCATGTTATT
AATTGCCTGTCTCCTCTGTTTAATCAAATATCTCATCGATAGTCTCCGCCATCCAGTTGTCCTCGCCTTAGTCGGACACC
GCCCAATTCCATTTGTCCCGTATATCAGCTACGGTGTCTTAATCGTTTTGTTTATTGTAAACACATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(102-195)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385ABK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

50.661

96.596

0.489

Multiple sequence alignment