Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DTQ13_RS03675 Genome accession   NZ_CP030979
Coordinates   794722..795288 (-) Length   188 a.a.
NCBI ID   WP_043558983.1    Uniprot ID   -
Organism   Parasaccharibacter sp. TMW 2.1888     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 789722..800288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTQ13_RS03655 (DTQ13_03645) - 790712..792175 (-) 1464 WP_081562377.1 mannitol dehydrogenase family protein -
  DTQ13_RS03660 (DTQ13_03650) - 792248..792919 (-) 672 WP_052348991.1 HAD family phosphatase -
  DTQ13_RS03665 (DTQ13_03655) - 793201..793983 (+) 783 WP_081562378.1 DUF421 domain-containing protein -
  DTQ13_RS03670 (DTQ13_03660) - 793984..794637 (-) 654 WP_219811875.1 hypothetical protein -
  DTQ13_RS03675 (DTQ13_03665) ssb 794722..795288 (-) 567 WP_043558983.1 single-stranded DNA-binding protein Machinery gene
  DTQ13_RS03680 (DTQ13_03670) uvrA 795426..798362 (+) 2937 WP_248461134.1 excinuclease ABC subunit UvrA -
  DTQ13_RS03685 (DTQ13_03675) - 798377..798715 (+) 339 WP_043558985.1 multidrug efflux SMR transporter -
  DTQ13_RS03690 (DTQ13_03680) - 798719..799267 (+) 549 WP_248461136.1 DUF2946 family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20042.69 Da        Isoelectric Point: 5.0784

>NTDB_id=302685 DTQ13_RS03675 WP_043558983.1 794722..795288(-) (ssb) [Parasaccharibacter sp. TMW 2.1888]
MAGSVNKVILVGNLGRDPEVRNTQSGSKIVNLAIATSDTWNDRNTGERRDRTEWHRVVIFNERVGDVAERYLRKGRKVYI
EGELRTRKWTDQQGVEKYTTEVVIDRFRGNLVLLDSQRGGGDGGGYGDDGYDGGYGDGGSNWAGGGSAPAGRGGAGGRGQ
QGGNFGGGAGWDSSSGQGDQALDDEIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=302685 DTQ13_RS03675 WP_043558983.1 794722..795288(-) (ssb) [Parasaccharibacter sp. TMW 2.1888]
ATGGCAGGTAGCGTAAACAAGGTCATTCTGGTGGGAAATCTCGGGCGTGACCCGGAGGTCCGGAACACCCAGTCCGGCAG
CAAGATCGTCAATCTGGCTATCGCTACCAGCGATACGTGGAACGACCGCAATACAGGAGAGCGGCGTGACCGTACGGAAT
GGCACCGTGTCGTCATTTTCAACGAGCGTGTCGGTGATGTGGCGGAACGTTATCTGCGCAAGGGCCGCAAGGTTTATATC
GAAGGCGAGCTGCGTACCCGCAAGTGGACGGACCAGCAGGGCGTGGAGAAATACACGACCGAGGTTGTGATCGATCGCTT
CCGTGGCAATCTTGTCCTGCTGGACAGCCAGCGTGGCGGTGGTGACGGCGGCGGCTATGGTGATGATGGTTATGACGGTG
GTTATGGTGATGGCGGCAGCAACTGGGCTGGTGGCGGGTCCGCTCCGGCGGGCCGTGGCGGTGCCGGTGGTCGTGGTCAG
CAGGGTGGCAACTTCGGTGGCGGTGCTGGCTGGGACAGTTCTTCCGGGCAGGGTGATCAGGCACTGGATGACGAGATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.5

100

0.484
  ssb Vibrio cholerae strain A1552

42.632

100

0.431

Multiple sequence alignment