Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ETT54_RS08725 Genome accession   NZ_CP035445
Coordinates   1742836..1743942 (+) Length   368 a.a.
NCBI ID   WP_009880735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1737836..1748942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT54_RS08705 (ETT54_08700) hasA 1738514..1739773 (+) 1260 WP_021775371.1 hyaluronan synthase HasA -
  ETT54_RS08710 (ETT54_08705) hasB 1739809..1741017 (+) 1209 WP_111697168.1 UDP-glucose 6-dehydrogenase HasB -
  ETT54_RS08715 (ETT54_08715) hasC 1741199..1742113 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  ETT54_RS08720 (ETT54_08720) yaaA 1742421..1742834 (+) 414 WP_111689713.1 S4 domain-containing protein YaaA -
  ETT54_RS08725 (ETT54_08725) recF 1742836..1743942 (+) 1107 WP_009880735.1 DNA replication/repair protein RecF Machinery gene
  ETT54_RS08730 (ETT54_08730) - 1743997..1744860 (-) 864 WP_002992310.1 GRP family sugar transporter -
  ETT54_RS08735 (ETT54_08735) guaB 1745063..1746544 (-) 1482 WP_002992312.1 IMP dehydrogenase -
  ETT54_RS08740 (ETT54_08740) trpS 1746852..1747874 (-) 1023 WP_136098206.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41825.74 Da        Isoelectric Point: 7.8294

>NTDB_id=302646 ETT54_RS08725 WP_009880735.1 1742836..1743942(+) (recF) [Streptococcus pyogenes strain emm92]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=302646 ETT54_RS08725 WP_009880735.1 1742836..1743942(+) (recF) [Streptococcus pyogenes strain emm92]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465