Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SYNPCC7002_RS09500 Genome accession   NC_010475
Coordinates   1982296..1983858 (+) Length   520 a.a.
NCBI ID   WP_012307508.1    Uniprot ID   -
Organism   Picosynechococcus sp. PCC 7002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1977296..1988858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7002_RS09475 (SYNPCC7002_A1893) rpmF 1978013..1978180 (-) 168 WP_012307503.1 50S ribosomal protein L32 -
  SYNPCC7002_RS09480 (SYNPCC7002_A1894) - 1978393..1979493 (+) 1101 WP_012307504.1 DUF389 domain-containing protein -
  SYNPCC7002_RS09485 (SYNPCC7002_A1895) pstB 1979838..1980641 (+) 804 WP_012307505.1 phosphate ABC transporter ATP-binding protein PstB -
  SYNPCC7002_RS09490 (SYNPCC7002_A1896) - 1980935..1981411 (+) 477 WP_012307506.1 FHA domain-containing protein -
  SYNPCC7002_RS09495 (SYNPCC7002_A1897) - 1981468..1982262 (+) 795 WP_012307507.1 TIGR03943 family putative permease subunit -
  SYNPCC7002_RS09500 (SYNPCC7002_A1898) comA 1982296..1983858 (+) 1563 WP_012307508.1 phospholipase D-like domain-containing protein Machinery gene
  SYNPCC7002_RS09505 (SYNPCC7002_A1899) - 1983914..1984702 (+) 789 WP_041443554.1 tetratricopeptide repeat protein -
  SYNPCC7002_RS09510 (SYNPCC7002_A1900) recQ 1984715..1986853 (-) 2139 WP_012307510.1 DNA helicase RecQ -
  SYNPCC7002_RS09515 (SYNPCC7002_A1901) - 1986876..1987511 (-) 636 WP_012307511.1 exopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 56783.89 Da        Isoelectric Point: 4.6445

>NTDB_id=30256 SYNPCC7002_RS09500 WP_012307508.1 1982296..1983858(+) (comA) [Picosynechococcus sp. PCC 7002]
MVNPAARRPFFAFWGLLAVGLLGCQGGRGRSPQDESIQVYFNQRQGRHISYTEPYRQLKRPGDNLEAVLIEGINSAQNTI
DIAIQELNLPLVAEVLADQAAAGITIRVIVENNYRQPWAEPDSAEILELDERDQGKYQEFVALADENQDGFLDAAETAKY
DAIAILERAKIPILDDTADGSKGSGLMHHKFMVVDGETVITGSANWTLSGIHGDFANPETRGNVNHLMRIQDAAIAQVFT
AEFEEMWTGHKFGVQKLQEPPQTFSVGNSRITVQFSPFSSSQPWENTSNGLIGSTLAQAQESISLALFVFSEQKIANILE
KEAQAGTAIRALIDPSFAFREYSDGLDLLGVNLKEKCDPFNRPWANPIQTVGTPKLPKGDKFHHKFAVIDGKTVITGSHN
WSAAANNQNDETLLIIQNEAIAQQFQAEFDQFYTMAYLGIPPFIASKQKPMPADCTVAATNGPVNLNTASAIELETLPGI
GPSLAQGIIEGRPYSGLTDLQRVSGIGEKKAADLAGKVTW

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=30256 SYNPCC7002_RS09500 WP_012307508.1 1982296..1983858(+) (comA) [Picosynechococcus sp. PCC 7002]
ATGGTTAATCCCGCCGCTCGCCGCCCATTTTTCGCTTTTTGGGGTCTGTTGGCCGTTGGTCTGCTGGGTTGCCAGGGAGG
AAGGGGGCGATCGCCCCAGGATGAATCCATTCAGGTGTATTTCAATCAGCGTCAAGGCCGACATATTAGTTACACCGAAC
CCTACCGCCAACTGAAACGCCCAGGGGATAACCTCGAAGCTGTTCTAATCGAGGGCATTAACAGCGCCCAAAACACCATC
GATATTGCGATTCAGGAGTTGAACTTGCCCCTGGTAGCTGAAGTTCTGGCCGACCAAGCCGCTGCGGGAATCACAATTCG
CGTCATCGTCGAAAATAATTATCGTCAACCCTGGGCTGAACCTGATTCGGCAGAAATTTTAGAACTCGATGAACGGGATC
AGGGAAAATACCAAGAATTTGTCGCCCTCGCCGACGAAAACCAAGATGGCTTTTTGGATGCGGCAGAGACGGCTAAATAT
GATGCGATCGCCATTTTAGAACGGGCAAAGATTCCGATTTTAGACGACACCGCCGACGGTTCCAAAGGGAGCGGCCTGAT
GCACCACAAATTTATGGTGGTCGATGGGGAAACGGTGATCACCGGCTCGGCGAATTGGACATTAAGCGGCATCCACGGAG
ATTTCGCCAACCCGGAAACCAGGGGCAATGTAAACCACCTAATGCGGATCCAAGATGCGGCGATCGCCCAGGTTTTTACG
GCAGAATTTGAGGAGATGTGGACAGGGCACAAATTTGGGGTTCAGAAACTTCAGGAACCGCCCCAAACCTTTAGCGTGGG
CAACAGTCGCATCACTGTTCAGTTTTCGCCTTTCTCCAGTTCCCAACCTTGGGAAAATACGAGCAATGGTCTCATTGGCA
GCACCCTCGCCCAAGCCCAAGAGTCGATTAGCCTGGCCCTATTTGTGTTCTCTGAGCAAAAAATCGCCAATATTTTAGAA
AAAGAAGCCCAAGCGGGCACTGCAATCCGCGCCTTAATTGATCCGAGTTTTGCCTTTCGGGAATATAGCGATGGGCTGGA
TCTGTTGGGGGTGAATCTCAAGGAAAAATGTGACCCCTTTAATCGGCCTTGGGCTAACCCCATTCAAACCGTCGGCACGC
CAAAATTACCCAAGGGGGACAAATTTCACCACAAATTCGCTGTCATTGATGGCAAAACCGTGATTACCGGCTCCCATAAT
TGGTCAGCTGCTGCCAACAACCAGAACGACGAAACCCTCTTAATTATCCAGAACGAGGCGATCGCCCAACAATTTCAAGC
TGAATTCGATCAGTTTTATACTATGGCCTACCTGGGGATTCCGCCCTTTATCGCCAGCAAACAAAAACCGATGCCCGCTG
ACTGTACTGTAGCCGCCACCAATGGCCCTGTGAACCTTAATACCGCCAGTGCCATCGAACTCGAAACCCTACCTGGCATT
GGCCCCAGCCTCGCCCAAGGAATTATCGAAGGCCGTCCCTACTCTGGTTTGACGGATCTGCAACGGGTGTCGGGCATTGG
GGAAAAGAAAGCCGCCGACCTGGCCGGAAAAGTCACTTGGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(462-519)

PLD-like domain (PLDc_2)

(69-247)

PLD-like domain (PLDc_2)

(295-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

47.243

100

0.494

Multiple sequence alignment