Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   SYNPCC7002_RS08205 Genome accession   NC_010475
Coordinates   1716878..1720051 (-) Length   1057 a.a.
NCBI ID   WP_012307252.1    Uniprot ID   B1XP36
Organism   Picosynechococcus sp. PCC 7002     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1711878..1725051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7002_RS08185 (SYNPCC7002_A1634) - 1712780..1713952 (+) 1173 WP_012307247.1 S-layer homology domain-containing protein -
  SYNPCC7002_RS08190 (SYNPCC7002_A1636) hisF 1713942..1714724 (-) 783 WP_012307249.1 imidazole glycerol phosphate synthase subunit HisF -
  SYNPCC7002_RS08195 (SYNPCC7002_A1637) - 1714930..1715226 (+) 297 WP_030006981.1 hypothetical protein -
  SYNPCC7002_RS08200 (SYNPCC7002_A1638) - 1715223..1716815 (-) 1593 WP_012307251.1 SpoIID/LytB domain-containing protein -
  SYNPCC7002_RS08205 (SYNPCC7002_A1639) pilL-C 1716878..1720051 (-) 3174 WP_012307252.1 hybrid sensor histidine kinase/response regulator Machinery gene
  SYNPCC7002_RS08210 (SYNPCC7002_A1640) - 1720237..1720989 (+) 753 WP_012307253.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SYNPCC7002_RS08215 (SYNPCC7002_A1641) - 1721145..1722383 (+) 1239 WP_012307254.1 GAF domain-containing sensor histidine kinase -
  SYNPCC7002_RS08220 (SYNPCC7002_A1642) dapF 1722380..1723225 (-) 846 WP_012307255.1 diaminopimelate epimerase -
  SYNPCC7002_RS08225 (SYNPCC7002_A1643) - 1723267..1723476 (+) 210 WP_012307256.1 Hfq-related RNA-binding protein -
  SYNPCC7002_RS08230 (SYNPCC7002_A1644) - 1723541..1724455 (+) 915 WP_012307257.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 1057 a.a.        Molecular weight: 117237.62 Da        Isoelectric Point: 4.5013

>NTDB_id=30253 SYNPCC7002_RS08205 WP_012307252.1 1716878..1720051(-) (pilL-C) [Picosynechococcus sp. PCC 7002]
MSNNSHNEAHNYQDSEFEDELLELFEDLDAETSAPPATDFPKEPATDFPKEIDPKVSFISFANNFEELLAFEEVTSPQSQ
TPQQASSQNEADLEADLEALLQDTDPNQPSETETYATESEPYFPLEDPVSPPLKRPKAISSKISPVTNGQITYYPALEDL
GQYLEVSPSSSANSVDWQALTQLIEQTPSAPSPSPSPKKRPQIAISKQTDFGELEALLQQADTMGGPPITTTSGPSTNRQ
RSQKVNSFEQTMRIPVKQLDNLSNLMGELVVNRNTLEQSQEKLRQFLDNLTGQVQRLNDIGSQMQDLYERSLLERSLLAS
RGQSSEYHFPPGFTDKADAPGRHRSQEYDPLEMDQFTGFHLLSQEMIELIVRVRESSSDIEFLVDDNEQVARNLRQVSTQ
LQEGLTKSRMIPFAQAADRLVRPVREISLKLNKRASLNVEGREVLIDKMILEQLYDPLTHLINNAITHGIESPEVRLSKG
KPAAGVVSLKAYIQGNQIVIAIADDGAGMDSEALVHKALEKNLITPDQLSDLSQQDIYDFIFHPGFTTKAQADDFSGRGV
GMDVVRTALGSIRGTITIDSALGKGTTFTIRLPLTLNICRALFCLNRHARIALPMDGVEDMQTYTLDQVEQEGRRRYIRW
RDSRLRVYPLSNLLTLQRQIGRGSIYGGVGDPDQIPVVILRSAGNLLAIQVDQVLGEQEIVIKQIEGPIPKPAAIAGATV
LGDGTVMPVVDVLELIELAAQGRVRAKATTWQDNPALHLLVPEMVQREPIVLIVDDSITVRELLSMSFTKAGYRVEQARD
GQEAWEKLRGGLPCELVFCDIEMPRMDGLELLSRIQKDPNLEKIPVAMLTSRGADRHRQMAAELGASAYFTKPYLEEVLL
DAAQKMRQGDVLLPGSTKQPTVSEPGDGMGDFEPLDDASVKITAPRILIVDDSVTVRELLAITFQKAGYHVERARDGEEA
LEQLLENPDFSLVFCDIEMPRLDGLALLEEIQQYPELAHIPIAMLTSRGAGRHRKIAADRGAKAYFTKPYVEDHLLEAAA
RLMAGEILLDENGKVVA

Nucleotide


Download         Length: 3174 bp        

>NTDB_id=30253 SYNPCC7002_RS08205 WP_012307252.1 1716878..1720051(-) (pilL-C) [Picosynechococcus sp. PCC 7002]
GTGAGCAACAACAGTCATAATGAAGCACATAACTATCAAGATTCTGAGTTTGAAGACGAACTCCTAGAACTGTTTGAAGA
CCTCGACGCAGAAACCTCTGCCCCCCCAGCGACCGATTTTCCCAAGGAGCCAGCGACCGATTTTCCCAAGGAGATCGATC
CGAAAGTTTCATTTATCAGCTTCGCAAATAACTTTGAAGAACTTTTAGCCTTCGAGGAAGTGACCTCCCCCCAGTCCCAA
ACGCCTCAGCAAGCCTCGTCCCAAAACGAAGCAGACCTCGAAGCCGACTTAGAAGCTCTCCTCCAAGATACTGATCCCAA
CCAACCCTCCGAAACAGAAACTTACGCCACCGAGAGCGAACCTTATTTTCCCCTCGAAGACCCCGTTTCCCCGCCCCTCA
AACGCCCCAAGGCCATTTCCTCCAAGATCTCCCCGGTTACCAACGGTCAGATCACCTACTACCCTGCCCTAGAGGATCTC
GGTCAATACCTAGAAGTATCACCAAGCTCGTCGGCCAATTCTGTTGACTGGCAAGCCCTCACCCAACTCATTGAACAAAC
TCCGAGCGCTCCTAGCCCTAGTCCCTCTCCCAAAAAACGCCCCCAAATTGCCATTTCCAAACAGACGGACTTTGGTGAAT
TAGAAGCCCTGCTCCAACAGGCAGACACCATGGGAGGGCCTCCCATTACTACCACCAGCGGCCCTAGTACAAATCGTCAA
CGCTCCCAAAAGGTCAACAGCTTTGAGCAGACCATGCGGATTCCCGTCAAGCAACTCGATAACCTCAGTAACTTGATGGG
AGAACTCGTTGTCAACCGCAATACCCTCGAACAAAGCCAAGAAAAACTCCGGCAATTCCTCGACAATCTCACGGGCCAAG
TCCAACGGCTCAACGACATTGGTAGCCAGATGCAAGATCTTTACGAACGCTCTCTCCTGGAGCGTTCCCTGCTAGCCAGT
CGTGGTCAAAGTAGTGAATATCACTTTCCCCCAGGTTTCACCGATAAGGCGGATGCCCCCGGTCGCCATCGTTCCCAAGA
ATATGACCCCCTAGAAATGGATCAGTTCACCGGCTTTCACCTCCTCTCCCAGGAGATGATTGAACTGATTGTGCGGGTGC
GAGAATCTTCTTCGGATATCGAATTTCTAGTCGATGACAATGAACAAGTTGCCCGTAATCTCCGGCAGGTCAGTACGCAG
CTCCAGGAAGGCTTGACTAAATCACGGATGATTCCCTTTGCCCAAGCAGCCGATCGCCTGGTGCGCCCCGTCCGGGAAAT
TTCCCTCAAACTCAATAAGCGAGCCTCCCTCAATGTCGAAGGTCGAGAAGTGCTCATTGACAAAATGATCCTAGAGCAGC
TCTATGATCCCCTGACTCACCTGATCAACAACGCCATTACCCATGGGATTGAGTCCCCGGAAGTACGCCTCAGTAAGGGT
AAGCCTGCGGCGGGGGTTGTCTCCCTCAAAGCCTATATTCAGGGGAATCAAATTGTAATTGCCATTGCCGATGATGGTGC
GGGGATGGATTCTGAAGCCCTCGTCCACAAAGCCCTTGAAAAAAACCTGATTACCCCTGATCAATTATCGGATCTCAGTC
AACAGGATATTTATGATTTTATTTTCCATCCTGGCTTTACCACCAAGGCACAGGCCGATGACTTTTCGGGTCGGGGGGTT
GGCATGGATGTGGTCCGCACGGCCCTCGGTAGTATTCGAGGCACAATCACCATTGACTCCGCCCTGGGTAAAGGTACAAC
GTTTACCATCCGGCTACCCCTCACCCTCAATATCTGCCGCGCTTTATTTTGTCTCAATCGCCACGCCCGCATTGCTCTGC
CCATGGATGGGGTTGAAGATATGCAGACCTACACCCTCGACCAAGTGGAACAGGAAGGCCGCAGACGTTATATTCGCTGG
CGAGATTCTCGATTGCGGGTGTATCCCCTCAGTAATCTATTGACGCTCCAACGACAAATTGGGCGGGGCTCAATTTATGG
AGGGGTTGGGGATCCTGACCAAATTCCCGTTGTGATCCTACGCAGTGCGGGCAATCTCCTGGCGATTCAGGTGGATCAGG
TGCTAGGGGAACAGGAAATCGTGATTAAACAGATCGAGGGGCCGATTCCGAAACCAGCGGCGATCGCCGGGGCGACAGTC
CTGGGGGATGGCACAGTTATGCCCGTGGTTGATGTGTTAGAGCTGATTGAACTTGCGGCCCAGGGACGGGTCAGGGCCAA
GGCTACCACCTGGCAAGATAACCCGGCCTTACACTTGCTCGTACCAGAGATGGTACAAAGGGAGCCCATTGTGTTGATTG
TGGATGATTCGATCACGGTGCGCGAACTCCTCTCGATGAGTTTCACAAAGGCTGGCTATCGGGTTGAGCAGGCCCGGGAC
GGCCAGGAAGCTTGGGAAAAACTGCGGGGAGGCTTACCCTGTGAACTGGTCTTTTGCGATATTGAGATGCCGCGCATGGA
TGGCTTGGAGCTATTATCTCGCATTCAAAAAGACCCGAATTTAGAAAAAATTCCGGTGGCCATGCTGACATCAAGGGGGG
CAGATCGCCACCGACAAATGGCCGCTGAACTGGGGGCGAGTGCCTATTTCACGAAACCCTATTTAGAAGAAGTGCTGTTG
GATGCGGCCCAAAAAATGCGCCAAGGAGACGTGTTACTGCCGGGCAGTACGAAACAGCCCACGGTCTCGGAGCCTGGGGA
CGGGATGGGCGATTTTGAACCCCTAGATGATGCGTCGGTAAAAATAACGGCCCCAAGGATTTTGATTGTGGATGATTCGG
TGACGGTGCGAGAATTGTTAGCCATTACCTTCCAAAAGGCGGGCTACCATGTGGAGCGGGCCCGGGATGGAGAAGAGGCT
CTAGAGCAGTTGTTGGAAAATCCCGATTTTAGTTTGGTGTTCTGTGATATTGAGATGCCGCGCCTAGATGGTTTAGCGTT
GCTCGAAGAAATTCAACAATATCCTGAATTGGCCCACATTCCCATTGCGATGTTGACCTCGCGCGGGGCCGGACGACACC
GGAAAATTGCGGCGGACCGGGGGGCAAAGGCCTATTTCACAAAGCCCTATGTGGAAGATCATTTGCTAGAGGCAGCGGCC
CGGTTAATGGCTGGGGAAATTTTACTAGACGAAAATGGTAAGGTGGTGGCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(771-882)

Response regulator receiver domain (Response_reg)

(927-1038)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(250-306)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(456-595)

CheW-like domain (CheW)

(603-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1XP36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

53.715

94.229

0.506

Multiple sequence alignment