Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DTQ05_RS16115 Genome accession   NZ_CP030931
Coordinates   3145187..3145705 (-) Length   172 a.a.
NCBI ID   WP_023469850.1    Uniprot ID   -
Organism   Exiguobacterium acetylicum strain AMCC 101217     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3140187..3150705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTQ05_RS16095 dnaB 3140980..3142332 (-) 1353 WP_023469846.1 replicative DNA helicase -
  DTQ05_RS16100 rplI 3142352..3142795 (-) 444 WP_023469847.1 50S ribosomal protein L9 -
  DTQ05_RS16105 - 3142792..3144777 (-) 1986 WP_149428088.1 DHH family phosphoesterase -
  DTQ05_RS16110 rpsR 3144912..3145142 (-) 231 WP_023469849.1 30S ribosomal protein S18 -
  DTQ05_RS16115 ssb 3145187..3145705 (-) 519 WP_023469850.1 single-stranded DNA-binding protein Machinery gene
  DTQ05_RS16120 rpsF 3145729..3146016 (-) 288 WP_023469851.1 30S ribosomal protein S6 -
  DTQ05_RS16125 ychF 3146137..3147237 (-) 1101 WP_023469852.1 redox-regulated ATPase YchF -
  DTQ05_RS16130 - 3147466..3147654 (-) 189 WP_023469853.1 DUF951 domain-containing protein -
  DTQ05_RS16135 - 3147626..3148555 (-) 930 WP_023469854.1 mechanosensitive ion channel family protein -
  DTQ05_RS16140 yyaC 3148738..3149355 (+) 618 WP_034786343.1 spore protease YyaC -
  DTQ05_RS16145 - 3149393..3150157 (-) 765 WP_023469856.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18544.19 Da        Isoelectric Point: 4.9901

>NTDB_id=302502 DTQ05_RS16115 WP_023469850.1 3145187..3145705(-) (ssb) [Exiguobacterium acetylicum strain AMCC 101217]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKEGQRRYRAEVVADSVRFLESRNASRSSDGSEGYASSTGGNGNAAGWGSQQQQNNSSSPAPASSNSGFGADPFSGG
SSIDLSDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=302502 DTQ05_RS16115 WP_023469850.1 3145187..3145705(-) (ssb) [Exiguobacterium acetylicum strain AMCC 101217]
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCGGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCATGTGACCGTCCTTTCACAGGGCAAGATGGGAAGCGAGAAGCTGATTTCATCGATTGCGTCGTTT
GGCGCAAGCAAGCAGAGAACGTTGCTCAGTATTTGAAGAAAGGTAGTCTTGCTGGTGTAGAGGGTCGCCTCCAGATTAGC
AGCTACGACGATAAAGAAGGGCAACGCCGTTATCGTGCGGAAGTCGTCGCTGATAGCGTCCGCTTCCTTGAGTCACGTAA
CGCGAGCCGTTCTTCGGATGGTAGCGAAGGCTACGCTTCATCTACTGGTGGAAACGGGAATGCTGCAGGATGGGGTTCAC
AGCAACAGCAGAACAACTCTTCCTCGCCAGCACCCGCTTCATCGAATTCGGGCTTCGGCGCTGATCCTTTCAGCGGCGGT
AGTTCGATCGACCTTTCAGACGACGATCTCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.547
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.222

100

0.547

Multiple sequence alignment