Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SYNPCC7002_RS04885 Genome accession   NC_010475
Coordinates   1006136..1007557 (-) Length   473 a.a.
NCBI ID   WP_012306605.1    Uniprot ID   A0AAE8LML1
Organism   Picosynechococcus sp. PCC 7002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1001136..1012557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7002_RS04860 (SYNPCC7002_A0973) - 1001397..1001870 (+) 474 WP_012306600.1 low molecular weight protein-tyrosine-phosphatase -
  SYNPCC7002_RS04865 (SYNPCC7002_A0974) - 1001903..1002865 (+) 963 WP_012306601.1 CAP domain-containing protein -
  SYNPCC7002_RS04870 (SYNPCC7002_A0975) btpA 1002985..1003818 (-) 834 WP_012306602.1 photosystem I biogenesis protein BtpA -
  SYNPCC7002_RS04875 (SYNPCC7002_A0976) - 1004056..1005033 (+) 978 WP_012306603.1 cysteine synthase A -
  SYNPCC7002_RS04880 (SYNPCC7002_A0977) - 1005160..1005930 (+) 771 WP_012306604.1 tetratricopeptide repeat protein -
  SYNPCC7002_RS04885 (SYNPCC7002_A0978) radA 1006136..1007557 (-) 1422 WP_012306605.1 DNA repair protein RadA Machinery gene
  SYNPCC7002_RS04890 (SYNPCC7002_A0979) rpaB 1007779..1008507 (+) 729 WP_012306606.1 response regulator transcription factor RpaB -
  SYNPCC7002_RS04895 (SYNPCC7002_A0980) recJ 1008671..1010671 (+) 2001 WP_012306607.1 single-stranded-DNA-specific exonuclease RecJ -
  SYNPCC7002_RS04900 (SYNPCC7002_A0981) psb30 1010742..1010873 (-) 132 WP_012306608.1 photosystem II reaction center protein Ycf12/Psb30 -
  SYNPCC7002_RS04905 (SYNPCC7002_A0982) - 1011024..1011383 (+) 360 WP_012306609.1 YkgJ family cysteine cluster protein -
  SYNPCC7002_RS16950 (SYNPCC7002_A0983) - 1011557..1011697 (-) 141 WP_012306610.1 hypothetical protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 51088.62 Da        Isoelectric Point: 6.8995

>NTDB_id=30247 SYNPCC7002_RS04885 WP_012306605.1 1006136..1007557(-) (radA) [Picosynechococcus sp. PCC 7002]
MAKAKTVYVCRECGAEARQWLGKCPDCGVYGSLQEEIREKESSTGVSRTWHHKPKTTRKAASPVSRTAVKFTDIDTRQRM
RFGSGFGELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQVAYQLSTSLPRILYVSAEESGQQIKLRGDRLRDADHPPEEN
LYVLTETGLETILAELETLRPQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEGAIAGP
RVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSELFLGNREEATPGTATVVACEGTRPL
LVELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVGIPLSKLDAYVASAGGLTVSEPAVDLGIAISLVASFRDRLV
SPQTVLIGEVGLGGQIRPVSHLETRLKEAMKLGFTRAIVPKGQKLPDGLDLDIIPVARVLDAIVAALPADGKE

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=30247 SYNPCC7002_RS04885 WP_012306605.1 1006136..1007557(-) (radA) [Picosynechococcus sp. PCC 7002]
ATGGCTAAGGCAAAAACGGTTTATGTGTGTCGTGAATGTGGGGCAGAGGCGCGGCAATGGCTCGGTAAATGTCCAGATTG
TGGGGTCTATGGGTCGCTGCAAGAAGAGATCCGCGAAAAGGAAAGCAGTACTGGTGTGAGCCGTACCTGGCACCATAAGC
CGAAAACAACCAGAAAAGCCGCCAGCCCAGTCTCCCGCACTGCGGTGAAATTTACAGATATTGACACTCGCCAACGGATG
CGCTTTGGGTCTGGGTTTGGGGAGTTAGACCGGGTGCTTGGCGGAGGGTTAGTCCCAGGCTCCTTGGTGCTGATTGGGGG
CGATCCGGGCATTGGGAAATCGACATTATTACTCCAGGTGGCCTATCAGCTCAGCACAAGTTTACCAAGAATTTTGTACG
TGTCGGCGGAGGAATCGGGCCAGCAAATCAAACTCAGGGGCGATCGCCTCCGGGATGCAGACCACCCCCCAGAGGAAAAT
TTATATGTGCTGACGGAAACGGGCCTAGAAACAATTTTGGCGGAACTAGAAACCCTCCGGCCCCAGGTGGCAGTAATTGA
CAGTATTCAAACCCTTTACTATTCGGCCCTGGGTTCGGCCCCCGGTTCAGTTTCCCAGGTGCGGGAATGCACGTCGGCTT
TGATGCAGGTGGCGAAGCGGGAAAATATCACGCTGTTTATCGTTGGTCATGTCACCAAGGAAGGGGCGATCGCCGGGCCA
CGGGTTTTGGAACACCTCGTTGATACGGTGCTGTATTTCGAGGGGGATAGATACGCCTCCCATCGGTTGTTGCGTTCCGT
GAAAAATCGCTTTGGGGCCACCCATGAAGTCGGCATTTTCGAGATGGGGGAGCAGGGATTAGAGGAAGTGCTTAATCCGT
CGGAACTTTTCCTCGGTAACCGCGAAGAGGCGACCCCCGGCACTGCCACCGTTGTCGCTTGTGAAGGCACCCGGCCCCTT
TTAGTAGAATTGCAAGCCCTGGTCAGTCCCACCAGTTATTCTTCCCCTAGGCGTTCCACCACGGGCGTTGATTATTCCCG
TCTCCAGCAAATTTTGGCGGTGTTAGAAAAGCGAGTGGGCATTCCCCTTTCTAAGTTAGATGCCTATGTGGCTTCGGCGG
GCGGTCTGACAGTTTCGGAACCCGCCGTTGATCTGGGAATTGCCATTTCTTTGGTGGCCAGTTTCCGCGATCGCCTTGTT
TCACCCCAGACTGTGCTAATCGGCGAAGTGGGCTTAGGGGGACAAATTCGCCCTGTTTCCCACCTCGAAACCCGCCTCAA
GGAAGCGATGAAATTGGGCTTTACCCGTGCCATTGTGCCCAAAGGCCAAAAGTTACCAGACGGTTTAGACCTCGATATTA
TTCCTGTGGCTCGCGTGCTGGATGCAATCGTCGCTGCTCTGCCTGCCGATGGGAAAGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(92-235)

Subunit ChlI of Mg-chelatase (ChlI)

(378-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.654

99.577

0.524
  radA Streptococcus pneumoniae Rx1

48.085

99.366

0.478
  radA Streptococcus pneumoniae D39

48.085

99.366

0.478
  radA Streptococcus pneumoniae R6

48.085

99.366

0.478
  radA Streptococcus pneumoniae TIGR4

48.085

99.366

0.478
  radA Streptococcus mitis SK321

49.774

93.446

0.465
  radA Streptococcus mitis NCTC 12261

49.548

93.446

0.463

Multiple sequence alignment