Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ETT56_RS09605 Genome accession   NZ_CP035443
Coordinates   1873097..1874203 (+) Length   368 a.a.
NCBI ID   WP_023610709.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1868097..1879203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT56_RS09585 (ETT56_09575) hasA 1868775..1870034 (+) 1260 WP_021775371.1 hyaluronan synthase HasA -
  ETT56_RS09590 (ETT56_09580) hasB 1870070..1871278 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  ETT56_RS09595 (ETT56_09590) hasC 1871460..1872374 (+) 915 WP_023610710.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  ETT56_RS09600 (ETT56_09595) yaaA 1872682..1873095 (+) 414 WP_002991446.1 S4 domain-containing protein YaaA -
  ETT56_RS09605 (ETT56_09600) recF 1873097..1874203 (+) 1107 WP_023610709.1 DNA replication/repair protein RecF Machinery gene
  ETT56_RS09610 (ETT56_09605) - 1874260..1875123 (-) 864 WP_023610738.1 GRP family sugar transporter -
  ETT56_RS09615 (ETT56_09610) guaB 1875325..1876806 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  ETT56_RS09620 (ETT56_09615) trpS 1877084..1878106 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41799.65 Da        Isoelectric Point: 7.8294

>NTDB_id=302460 ETT56_RS09605 WP_023610709.1 1873097..1874203(+) (recF) [Streptococcus pyogenes strain emm58]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFTDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=302460 ETT56_RS09605 WP_023610709.1 1873097..1874203(+) (recF) [Streptococcus pyogenes strain emm58]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAACAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTACCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465

Multiple sequence alignment