Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DTA40_RS02200 Genome accession   NZ_CP030928
Coordinates   401356..401799 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS18     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 396356..406799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTA40_RS02180 (DTA40_02200) - 396880..397632 (-) 753 WP_024704202.1 NUDIX hydrolase -
  DTA40_RS02185 (DTA40_02205) - 397696..398802 (-) 1107 WP_024009756.1 AAA family ATPase -
  DTA40_RS02190 (DTA40_02210) gdhA 399146..400498 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  DTA40_RS02195 (DTA40_02215) - 400756..401166 (+) 411 WP_011680804.1 peptide deformylase -
  DTA40_RS02200 (DTA40_02220) rcrR 401356..401799 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DTA40_RS02205 (DTA40_02225) rcrP 401803..403617 (+) 1815 WP_024704204.1 ABC transporter ATP-binding protein Regulator
  DTA40_RS02210 (DTA40_02230) rcrQ 403607..405385 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  DTA40_RS02215 (DTA40_02235) - 405541..405798 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=302412 DTA40_RS02200 WP_002945408.1 401356..401799(+) (rcrR) [Streptococcus thermophilus strain CS18]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=302412 DTA40_RS02200 WP_002945408.1 401356..401799(+) (rcrR) [Streptococcus thermophilus strain CS18]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment