Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ETT56_RS02200 Genome accession   NZ_CP035443
Coordinates   420696..421730 (+) Length   344 a.a.
NCBI ID   WP_023610531.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm58     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 415696..426730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT56_RS02170 (ETT56_02170) tsaE 416761..417222 (+) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ETT56_RS02175 (ETT56_02175) - 417197..417721 (+) 525 WP_020905405.1 GNAT family N-acetyltransferase -
  ETT56_RS02180 (ETT56_02180) - 417730..419013 (+) 1284 WP_002983372.1 LCP family protein -
  ETT56_RS02185 (ETT56_02185) - 419124..419480 (-) 357 WP_002988657.1 hypothetical protein -
  ETT56_RS02190 (ETT56_02190) - 419477..419896 (-) 420 WP_011285081.1 HIT family protein -
  ETT56_RS02195 (ETT56_02195) pptA 419968..420693 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  ETT56_RS02200 (ETT56_02200) pptB 420696..421730 (+) 1035 WP_023610531.1 ABC transporter permease Regulator
  ETT56_RS02205 (ETT56_02205) ccrZ 421794..422585 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  ETT56_RS02210 (ETT56_02210) trmB 422585..423220 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ETT56_RS02220 (ETT56_02220) rimP 423479..424015 (+) 537 WP_023610502.1 ribosome maturation factor RimP -
  ETT56_RS02225 (ETT56_02225) nusA 424190..425347 (+) 1158 WP_002994325.1 transcription termination factor NusA -
  ETT56_RS02230 (ETT56_02230) - 425363..425659 (+) 297 WP_002983486.1 YlxR family protein -
  ETT56_RS02235 (ETT56_02235) - 425652..425954 (+) 303 WP_002983488.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40256.48 Da        Isoelectric Point: 10.3713

>NTDB_id=302400 ETT56_RS02200 WP_023610531.1 420696..421730(+) (pptB) [Streptococcus pyogenes strain emm58]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAILLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=302400 ETT56_RS02200 WP_023610531.1 420696..421730(+) (pptB) [Streptococcus pyogenes strain emm58]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTTTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTATATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.314

100

0.433

  pptB Streptococcus salivarius strain HSISS4

43.023

100

0.43


Multiple sequence alignment