Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DR994_RS08800 Genome accession   NZ_CP030927
Coordinates   1711986..1712942 (-) Length   318 a.a.
NCBI ID   WP_173940669.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1706986..1717942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS08770 (DR994_08995) proC 1707540..1708310 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  DR994_RS08775 (DR994_09000) - 1708340..1709002 (-) 663 WP_002946116.1 type II CAAX endopeptidase family protein -
  DR994_RS08780 (DR994_09005) - 1709105..1709548 (-) 444 WP_002946118.1 hypothetical protein -
  DR994_RS10170 (DR994_09010) - 1709622..1709960 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  DR994_RS08790 (DR994_09015) - 1710291..1710488 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  DR994_RS08795 (DR994_09020) - 1710737..1711930 (-) 1194 WP_022096898.1 acetate kinase -
  DR994_RS08800 (DR994_09025) comYH 1711986..1712942 (-) 957 WP_173940669.1 class I SAM-dependent methyltransferase Machinery gene
  DR994_RS08805 (DR994_09030) comGG 1712987..1713304 (-) 318 WP_141326604.1 competence type IV pilus minor pilin ComGG -
  DR994_RS08810 (DR994_09035) comYF 1713282..1713719 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  DR994_RS08815 (DR994_09040) comGE 1713703..1713996 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  DR994_RS08820 (DR994_09045) comYD 1713968..1714396 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  DR994_RS08825 (DR994_09050) comYC 1714356..1714682 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  DR994_RS08830 (DR994_09055) comYB 1714679..1715779 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  DR994_RS08835 (DR994_09060) comGA/cglA/cilD 1715661..1716602 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  DR994_RS08840 (DR994_09065) - 1716683..1717045 (-) 363 WP_173940670.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35887.03 Da        Isoelectric Point: 4.7123

>NTDB_id=302386 DR994_RS08800 WP_173940669.1 1711986..1712942(-) (comYH) [Streptococcus thermophilus strain CS9]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVTNELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=302386 DR994_RS08800 WP_173940669.1 1711986..1712942(-) (comYH) [Streptococcus thermophilus strain CS9]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTACTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.571

99.057

0.679
  comYH Streptococcus mutans UA140

68.571

99.057

0.679

Multiple sequence alignment