Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ETT57_RS09305 Genome accession   NZ_CP035442
Coordinates   1819773..1820879 (+) Length   368 a.a.
NCBI ID   WP_009880735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1814773..1825879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT57_RS09285 (ETT57_09275) hasA 1815451..1816710 (+) 1260 WP_021775371.1 hyaluronan synthase HasA -
  ETT57_RS09290 (ETT57_09280) hasB 1816746..1817954 (+) 1209 WP_063812386.1 UDP-glucose 6-dehydrogenase HasB -
  ETT57_RS09295 (ETT57_09290) hasC 1818136..1819050 (+) 915 WP_111690866.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  ETT57_RS09300 (ETT57_09295) yaaA 1819358..1819771 (+) 414 WP_111690867.1 S4 domain-containing protein YaaA -
  ETT57_RS09305 (ETT57_09300) recF 1819773..1820879 (+) 1107 WP_009880735.1 DNA replication/repair protein RecF Machinery gene
  ETT57_RS09310 (ETT57_09305) - 1820934..1821797 (-) 864 WP_002992310.1 GRP family sugar transporter -
  ETT57_RS09315 (ETT57_09310) guaB 1821999..1823480 (-) 1482 WP_136048560.1 IMP dehydrogenase -
  ETT57_RS09320 (ETT57_09315) trpS 1823788..1824810 (-) 1023 WP_136048559.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41825.74 Da        Isoelectric Point: 7.8294

>NTDB_id=302364 ETT57_RS09305 WP_009880735.1 1819773..1820879(+) (recF) [Streptococcus pyogenes strain emm25]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=302364 ETT57_RS09305 WP_009880735.1 1819773..1820879(+) (recF) [Streptococcus pyogenes strain emm25]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465